Input parameters:

  Query = ENSMUSP00000117287 (Len=571)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000117287, Len=571):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTSHRQSSDTFGGILPSTLSSRYLSIVNQLPEEFSSVVSEMMVHLENIFSLAENFFQAIERFSRTPDLLERNKMSIGVGA 80  
WD40-rpts                                                                                      

Query       81 EGDSWPCHVSHEAPMGSAQTTENSAKEEDKQVPESAALQHPKFKSTPGPQLPTRRRFLSESDELQDPQPVWDAEPQFCQG 160 
WD40-rpts                                                                                      

Query      161 FLIQGLWELFMDSRQKNQQEHGGEDSSQESKDSGLCDFKPEPQPRHRNSLSDSALLDYYQEDVSRPQPETQESSGRADKF 240 
WD40-rpts                           (_________________WD 1________________)     (______________

Query      241 LKPLSWGSEVLESSCNQPSTALWQLERFTVPQALQKVRVLKHQELLLVVAVSSFTRHVFTCSQSGIKVWNLVNQVAEDRD 320 
WD40-rpts      ___WD 2________________)(____________________WD 3____________________)          

Query      321 PESHLKCSVQDNKVYLRTCLLSSNSRTLFAGGYNLPGVIVWDLAAPSLYEKCQLPCEGLSCQALANTKENMALAGFTDGT 400 
WD40-rpts        (_________________WD 4_________________)   (_________________WD 5_____________

Query      401 VRIWDLRTQEIVRNLKGPTNSARNLVVKDDNIWTGGLDACLRCWDLRMAKVSLEHLFQSQIMSLAHSPTEDWLLLGLANG 480 
WD40-rpts      ____)   (________________WD 6_______________)(__________________WD 7____________

Query      481 QHCLFNSRKRDQVLTVDTKDNTILGLKFSPNGKWWASVGMGNFITVHSMPTGAKLFQVPEVGPVRCFDMTENGRLIITGS 560 
WD40-rpts      _____)   (_________________WD 8________________)(_________________WD 9__________

Query      561 RDCASVYHIKY 571 
WD40-rpts      _______)   

9 WD40-repeats found in QUERY=ENSMUSP00000117287 (Len=571):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   182-220      7.52  425.11  0.00012       15.0%     23.80
  WD 2:  Seg  3   226-264      6.60  387.13  0.00038       12.5%     43.24
  WD 3:  Seg  7   265-310      6.20  370.73  0.00063       20.0%     48.71
  WD 4:  Seg 11   323-362      6.67  390.21  0.00034       15.0%     54.54
  WD 5:  Seg 15   366-405      7.67  431.64  9.5e-05       17.5%     52.08
  WD 6:  Seg 19   409-445      7.79  436.44  8.2e-05       25.0%     50.93
  WD 7:  Seg 23   446-486      7.59  428.24  0.00011       17.5%     55.91
  WD 8:  Seg 27   490-528      8.86  480.70  2.1e-05       22.5%     56.07
  WD 9:  Seg 31   529-568      6.02  363.32  0.00079       15.0%     50.43

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  182-220    -GG-------E-DSSQE-SKDSGLCDFKPEPQPRHR-NSLSDS-ALLDYYQ
   WD 2  226-264    -PQ-------P-ETQES-SGRADKFLKPLSWGSEVL-ESSCNQ-PSTALWQ
   WD 3  265-310    LERFTVPQALQ-KVRVL-KHQELLLVVAVSSFTRHV-FTCS-Q-SGIKVWN
   WD 4  323-362    -SH-------L-KCSVQ-DNKVYLRTCLLSSNSRTL-FAGGYNLPGVIVWD
   WD 5  366-405    -PS-------L-YEKCQ-LPCEGLSCQALANTKENMALAGFTD-GTVRIWD
   WD 6  409-445    -QE-------I-VRNLK-GPTNSARNLVVKDDN--I-WTGGLD-ACLRCWD
   WD 7  446-486    LRM-------AKVSLEH-LFQSQIMSLAHSPTEDWL-LLGLAN-GQHCLFN
   WD 8  490-528    -RD-------Q-VLTVD-TKDNTILGLKFSPNGKWW-ASVGMG-NFITVHS
   WD 9  529-568    MPT-------G-AKLFQVPEVGPVRCFDMTENGRLI-ITGSRD--CASVYH

   WD40 Template    TGE-------C-LRTLS-GHTSGVTSVSFSPDGKRL-VSGSED-GTIKVWD