Input parameters:

  Query = ENSMUSP00000117082 (Len=566)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000117082, Len=566):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFPFGPHSPGGDETAGAEEPPPLGGPAAASRPPSPAPRPASPQRGADAASPPPVAGSPRLPGGPAVSPAERAGEFAAPGA 80  
WD40-rpts                                                                                      

Query       81 LELSAATASASQAKLSPSSSPRRRSRPDWRAGGRSRQGLGAGLGGPGARLFGWLRERSLGRGLFVDPARDNFRTMTNLYG 160 
WD40-rpts                                            (_________________WD 1________________)   

Query      161 SIHPADSVYLSTRTHGAVFNLEYSPDGSVLTVACEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLFATCSDDTT 240 
WD40-rpts          (_________________WD 2________________)   (_________________WD 3____________

Query      241 IALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVIIWDTNRCTEDGCPHKKFFHTRFLMRMRLTPDCSKM 320 
WD40-rpts      ____)    (_________________WD 4________________)      (_________________WD 5____

Query      321 LISTSSGYLLILHELDLTKSLEVGSYPILRARRTTSSSDLTTTSSSSGSRVSGSPCHHNDSNSTEKHMSRASQREGVSPR 400 
WD40-rpts      _____________)(_________________WD 6________________)                 (_________

Query      401 NSLEVLTPEVPGERDRGNCITSLQLHPKGWATLLRCSSNTDDQEWTCVYEFQEGAPVRPVSPRCSLRLTHYIEEANVGRG 480 
WD40-rpts      ________________WD 7_________________________)                    (_____________

Query      481 YIKELCFSPDGRMISSPHGYGIRLLGFDKQCSELVDCLPKEASPLRVIRSLYSHNDVVLTTKFSPTHCQIASGCLSGRVS 560 
WD40-rpts      ____WD 8_________________)                  (_________________WD 9______________

Query      561 LYQPKF 566 
WD40-rpts      __)   

9 WD40-repeats found in QUERY=ENSMUSP00000117082 (Len=566):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   119-157      4.65  306.79  0.00456       10.0%     34.00
  WD 2:  Seg  4   165-203      8.56  468.11  3.1e-05       20.0%     52.96
  WD 3:  Seg  8   207-245      6.79  394.94  0.00030       32.5%     53.02
  WD 4:  Seg 12   250-288      9.56  509.51  8.4e-06       32.5%     54.27
  WD 5:  Seg 16   295-334      7.09  407.54  0.00020       22.5%     47.65
  WD 6:  Seg 20   335-373      6.13  367.87  0.00069       10.0%     35.69
  WD 7:  Seg 25   391-446      5.48  340.94  0.00158       17.5%     39.03
  WD 8:  Seg 28   467-506      5.52  342.49  0.00151       17.5%     42.85
  WD 9:  Seg 33   525-563      8.59  469.42  2.9e-05       25.0%     50.59

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  119-157    -L-GA---------------GLGGP-GARLFGWLRERSLGR-GLFVDPARDNFRTMTN
   WD 2  165-203    -A-DS---------------VYLST-RTHGAVFNLEYSPDG-SVLTVACEQTEVLLFD
   WD 3  207-245    -S-KH---------------IKTLSEAHEDCVNNIRFL-DN-RLFATCSDDTTIALWD
   WD 4  250-288    -N-TK---------------VCTLH-GHTSWVKNIEYDTNT-RLLVTSGFDGNVIIWD
   WD 5  295-334    -D-GC---------------PHKKF-FHTRFLMRMRLTPDCSKMLISTSSGYLLILHE
   WD 6  335-373    -L-DL---------------TKSLE-VGSYPILRARRTTSS-SDLTTTSSSSGSRVSG
   WD 7  391-446    AS-QREGVSPRNSLEVLTPEVPGER-DRGNCITSLQLHPKGWATLLRCSSNTDDQEWT
   WD 8  467-506    RLTHY---------------IEEAN-VGRGYIKELCFSPDG-RMISSPH-GYGIRLLG
   WD 9  525-563    -L-RV---------------IRSLY-SHNDVVLTTKFSPTH-CQIASGCLSGRVSLYQ

   WD40 Template    TG-EC---------------LRTLS-GHTSGVTSVSFSPDG-KRLVSGSEDGTIKVWD