WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: ENSMUSP00000117066 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000117066 (Len=2643) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000117066, Len=2643): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAEPSPARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHVAPDHLLQ 80
WD40-rpts
Query 81 ICQRIGPMLDKEVPPSISRVTSLLGAGRQSLLRTAKDCRHTVWKGSAFAALHRGRPPEMPVNYGPPPSLVEIHRGRQLTG 160
WD40-rpts (_________________WD 1________________)
Query 161 CSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYEN 240
WD40-rpts (________________WD 2________________) (_________________WD 3_
Query 241 TLIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAKGPQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEK 320
WD40-rpts _______________)(____________________WD 4____________________) (____
Query 321 PRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFDAPEKIAELESHTDKVDSIQFCNNGDRFLSGSRDGTARIWRFEQL 400
WD40-rpts ____________WD 5_______________)(___________________WD 6___________________)(___
Query 401 EWRSILLDMSARISGDTSSEEERFMKPKVTMIAWNQDDSTVVTAVNDHVLKVWSSYTGQLLHNLLGHADEVFVLETHPFD 480
WD40-rpts _______________________WD 7__________________________) (_________________WD 8_
Query 481 SRIMLSAGHDGSIFIWDITKGIKMKHYFNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFF 560
WD40-rpts ________________) (__________________WD 9__________________)
Query 561 HTDYRPLIRDSNNYVLDEQTQQAPHLMPPPFLVDVDGNPHPTKFQRLVPGRENSADEHLVPQLGYVATSDGEVIEQIISL 640
WD40-rpts
Query 641 HTNDSGDASPESSVLDGMIRQLQQQQDQRLGVDQDGTANGLPSGEGTPRRGSFRRLSLDIQSPPNIGLRRSGQVEGVRQM 720
WD40-rpts
Query 721 HQNAPRSQIATERDLQAWKRRVVVPEAPPGMFRRLEDIRIERGEEERNLYVIGRKKKTFQVPQKSNSMVLVSQSRQRTCR 800
WD40-rpts
Query 801 RKYANYSRRNADQCELSSGNESSGSVRHETSYDQSEGSCSSEDDEWRNDRRSGSDSDSSSDSSSQYSDWTADTGINLQPP 880
WD40-rpts
Query 881 LRMSCRRRVTRFCSTSEDEMSMENISPPKRRRKRRKESKPKRESLRRMTPAELANMEHLYEFHPPVWITDTTLRKSPFVP 960
WD40-rpts
Query 961 QMGDEVMYFRQGHEAYIEAVRRNNIYELNPHKEPWRKMDLRDQELVKIVGLRYEVGPPTLCCLKLAFIDPATGRLTDKSF 1040
WD40-rpts
Query 1041 SIRYHDMPDVIDFLVLRQFYDEARQRNWQPCDRFRSIIDDAWWFGTVLSQEPYQPQYPDSHFQCYIVRWDNTETEKLSPW 1120
WD40-rpts
Query 1121 DMEPIPDNVDPPEELGASISVTSDELEKLLYKPQEGEWGQRSRDEECDRIISGIDQLLNLDIAAAFAGPVDLCTYPKYCT 1200
WD40-rpts
Query 1201 VVAYPTDLYTIRMRLVNRFYRRLSALIWEVRYIEHNARTFNEPESVIARSAKKITDQLLKFIKNQDCTNISELCNTSDND 1280
WD40-rpts
Query 1281 EDDSADDLDDSDLPKTSSGRRKVHNWKRRSRASGCIESDWRRQCKALLILIFQCEDSEPFRQPVDLDEYPDYRDIIDTPM 1360
WD40-rpts
Query 1361 DFGTVRETLEAGNYDSPVEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISFDFKIGQKFKEKLRRSQRF 1440
WD40-rpts
Query 1441 KQRQNCNGAVPGDRRRRNVKQKQFKSQTKVIPQLMCPPSQSTSSKVPLSATRKTSAGVSSGFTSGDSSDSAGSLERVRRQ 1520
WD40-rpts
Query 1521 RPEVLRSGSVLFGSEMEDFLATSSSSSASNSSEESKASPGARESSLRSGVLRGSNLGVTRTRAARRKAGSVSLENGCGRK 1600
WD40-rpts
Query 1601 ATRKRVYLSDSDNNSVETDENLKNRKCGSSRKVLRKCAAVAASKIKLMSDAEDSSSESPCSGRKLPHRNASAVARKKLLH 1680
WD40-rpts
Query 1681 NSDDQSLKSETEELKDQNQSLLISGPHSVHNSISDSESDSDLRATRKTWNANGCTSHTAATCKTKSRPIESSEEDSRCHG 1760
WD40-rpts
Query 1761 SDHGPSSTGDPSTSGQKLRADSISEEADSEPESSVLCKNTHLCKKAKILSDSEDCEEKCGERRGPEVEGSPVSEALREAI 1840
WD40-rpts
Query 1841 LAPQCLSHRGSETDVDSDGGAVREKSYSNENGSVSLENGQRRKVSRKSSSDKESNLQVTQKSPKDRSSPSRITQRASVAT 1920
WD40-rpts
Query 1921 DKMKLTSDAEDLSLESVCTRSKRRRKKPARFACTPTRKTSAGVSSGFTSGDSSVSAGSLERVRRQRPEVLRSGSVLFGSE 2000
WD40-rpts
Query 2001 MEDFLATSSSSSASNSSEESKASPGARESSLRSGVLRGSNLGVTRTRAARRKAGSVSLENGCGRKATRKRVYLSDSDNNS 2080
WD40-rpts
Query 2081 VETDENLKNRKCGSSRKVLRKCAAVAASKIKLMSDAEDSSSESPCSGRKLPHRNASAVARKKLLHNSDDQSLKSETEELK 2160
WD40-rpts
Query 2161 DQNQSLLISGPHSVHNSISDSESDSDLRATRKTWNANGCTSHTAATCKTKSRPIESSEEDSRCHGSDHGPSSTGDPSTSG 2240
WD40-rpts
Query 2241 QKLRADSISEEADSEPESSVLCKNTHLCKKAKILSDSEDCEEKCGERRGPEVEGSPVSEALREAILAPQCLSHRGSETDV 2320
WD40-rpts
Query 2321 DSDGGAVREKSYSNENGSVSLENGQRRKVSRKSSSDKESNLQVTQKSPKDRSSPSRITQRASVATDKMKLTSDAEDLSLE 2400
WD40-rpts
Query 2401 SVCTRSKRRRKKPARFACTPAKTALSSEEKHAHCEVPEAQPACRNKLPEPEHQDSAENPSQAASADLNSGGGSSFEQRKS 2480
WD40-rpts
Query 2481 IQSRQMGAVCVRPPPKTQSSSAGLSQENARSQTLDSETSLPSESVLTQKATVESNFEEELNYGLRRWNGRRLRTYGKAPL 2560
WD40-rpts
Query 2561 SRTAQVTPSLQASAEVGVKRRRMHPEVDGEDVPGQMGSSGCGPDTSPKASDLGSVTDSDVDCTDNTQTQRKKKRKGKARV 2640
WD40-rpts
Query 2641 LSK 2643
WD40-rpts
 9 WD40-repeats found in QUERY=ENSMUSP00000117066 (Len=2643): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 86-124 3.94 277.50 0.01128 20.0% 34.09 WD 2: Seg 7 177-214 8.75 475.99 2.4e-05 35.0% 45.32 WD 3: Seg 10 218-256 8.95 484.22 1.9e-05 30.0% 52.90 WD 4: Seg 14 257-302 7.98 444.49 6.4e-05 42.5% 52.50 WD 5: Seg 18 316-352 4.94 318.65 0.00316 22.5% 40.61 WD 6: Seg 21 353-396 9.35 500.86 1.1e-05 42.5% 55.40 WD 7: Seg 25 397-454 5.68 349.15 0.00123 30.0% 46.58 WD 8: Seg 29 458-497 7.90 441.09 7.1e-05 35.0% 51.63 WD 9: Seg 33 503-544 4.44 298.06 0.00598 20.0% 45.90Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 86-124 GP----M-L---------DKEVPPSISR---------VTSLLGAG-RQS-----LLRTAKDCRHTVWK WD 2 177-214 ------K-M---------HRRILGHLSA---------VYCVAFDR-TGH----RIFTGSDDCLVKIWS WD 3 218-256 -G----R-L---------LSTLRGHSAE---------ISDMAVNY-ENT----LIAAGSCDKIIRVWC WD 4 257-302 LR----T-C-------APVAVLQGHTGS---------ITSLQFSP-MAKGPQRYMVSTGADGTVCFWQ WD 5 316-352 --------K---------FTEKPRPGVQ---------MLCSSFSV-GGM----FLATGSTDHVIRMYF WD 6 353-396 LGFDAPE-K---------IAELESHTDK---------VDSIQFCN-NGD----RFLSGSRDGTARIWR WD 7 397-454 FE----Q-LEWRSILLDMSARISGDTSSEEERFMKPKVTMIAWNQ-DDS----TVVTAVNDHVLKVWS WD 8 458-497 -G----Q-L---------LHNLLGHADE---------VFVLETHPFDSR----IMLSAGHDGSIFIWD WD 9 503-544 KM----KHY---------FNMIEGQGHG--------AVFDCKFSQ-DGQ----HFACTDSHGHLLIFG WD40 Template TG----E-C---------LRTLSGHTSG---------VTSVSFSP-DGK----RLVSGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |