Input parameters:

  Query = ENSMUSP00000116772 (Len=1076)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000116772, Len=1076):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMAALAAGGYTRSDTIEKLSSVMAGVPARRNQSSPPPAPPLCLRRRTRLAAAPEDTVQNRVTLEKVLGITAQNSSGLTCD 80  
WD40-rpts                                                         (_____________________WD 1___

Query       81 PGTGHVAYLAGCVVVVLNPKENKQQHIFNTTRKSLSALAFSPDGKYIVTGENGHRPAVRIWDVEEKTQVAEMLGHKYGVA 160 
WD40-rpts      _________________)   (__________________WD 2_________________)   (______________

Query      161 CVAFSPNMKHIVSMGYQHDMVLNVWDWKKDIVVASNKVSCRVIALSFSEDSSYFVTVGNRHVRFWFLEASTEAKVTSTVP 240 
WD40-rpts      ____WD 3_________________)  (________________WD 4________________)              

Query      241 LVGRSGILGELHNNIFCGVACGRGRMAGNTFCVSYSGLLCQFNEKRVLDKWINLKVSLSSCLCVSDELIFCGCTDGIVRI 320 
WD40-rpts            (_______________WD 5______________) (_________________WD 6________________

Query      321 FQAHSLLYLTNLPKPHYLGVDVAHGLDSSFLFHRKAEAVYPDTVALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIWS 400 
WD40-rpts      _)                     (____________________WD 7___________________)(___________

Query      401 ELFHSSFVWNVEVYPEFEDQRACLPSGTFLTCSSDNTIRFWNLDSASDTRWQKNIFSDSLLKVVYVENDIQHLQDLSHFP 480 
WD40-rpts      _____________WD 8________________________)                                      

Query      481 DRGSENGTPMDMKAGVRVMQVSPDGQHLASGDRSGNLRIHELHFMDELIKVEAHDAEVLCLEYSKPETGVTLLASASRDR 560 
WD40-rpts        (_________________WD 9________________)   (__________________WD10_____________

Query      561 LIHVLNVEKNYNLEQTLDDHSSSITAIKFAGTRDVQMISCGADKSIYFRSAQQASDGLHFVRTHHVAEKTTLYDMDIDIT 640 
WD40-rpts      _____)     (_________________WD11________________)(_____________________WD12____

Query      641 QKYVAVACQDRNVRVYNTVSGKQKKCYKGSQGDEGSLLKVHVDPSGTFLATSCSDKSISLIDFYSGECVAKMFGHSEIVT 720 
WD40-rpts      ________________)      (_________________WD13________________)   (______________

Query      721 GMKFTYDCRHLITVSGDSCVFIWHLGPEITTCMKQHLLEINHQEQQQQPKDQKWSGPPSQETYASTPSEIRSLSPGEQTE 800 
WD40-rpts      ___WD14________________)(_______________________WD15_______________________)    

Query      801 DEMEEECEPEELLKTPSKDSLDPDPRCLLTNGKLPLWAKRLLGDDDVADSSAFHAKRSYQPHGRWAERAEQEPLKTILDA 880 
WD40-rpts                                          (___________________WD16__________________) 

Query      881 WSLDSYFTPMKPENLQDSVLDSVEPQNLAGLLSECSLGNGHTSPGEGLVSYLLHPELGSPKEDNRGHPSYLPLQREATEA 960 
WD40-rpts        (_________________WD17________________)                (_________________WD18_

Query      961 SELILCSPEAEVSLTGMHREYYEEETEAGPEDQQGDTYLRVSSVSSKDQSPPEDSGESEAELECSFAAAHSSAPQTDPGP 1040
WD40-rpts      _______________)                                                                

Query     1041 HLTMTAASSAVTQSADKSSPPCLPSRVPKYRRAFPA 1076
WD40-rpts                                          

18 WD40-repeats found in QUERY=ENSMUSP00000116772 (Len=1076):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    52-98       4.10  284.06  0.00922       10.0%     48.36
  WD 2:  Seg  9   102-142      7.32  417.18  0.00015       25.0%     56.41
  WD 3:  Seg 13   146-186      8.02  445.99  6.1e-05       37.5%     56.19
  WD 4:  Seg 17   189-226      5.97  361.38  0.00084       17.5%     52.47
  WD 5:  Seg 22   247-281      3.68  266.83  0.01568        5.0%     38.04
  WD 6:  Seg 25   283-322      6.86  397.88  0.00027       10.0%     50.47
  WD 7:  Seg 31   344-388      7.09  407.59  0.00020       22.5%     52.15
  WD 8:  Seg 35   389-442      5.95  360.59  0.00086       25.0%     51.59
  WD 9:  Seg 42   483-521      8.38  460.99  3.8e-05       30.0%     45.32
  WD10:  Seg 45   525-566      6.72  392.05  0.00032       25.0%     56.32
  WD11:  Seg 49   572-610      6.83  396.76  0.00028       22.5%     48.47
  WD12:  Seg 52   611-657      5.92  359.09  0.00090       10.0%     46.91
  WD13:  Seg 56   664-702      7.82  437.53  7.9e-05       22.5%     50.87
  WD14:  Seg 60   706-744      9.49  506.84  9.2e-06       32.5%     57.63
  WD15:  Seg 64   745-796      4.48  299.82  0.00566       15.0%     16.01
  WD16:  Seg 69   837-879      6.11  367.18  0.00070       12.5%     26.22
  WD17:  Seg 72   883-921      4.50  300.36  0.00557       12.5%      9.55
  WD18:  Seg 74   938-976      5.47  340.44  0.00161       15.0%     13.90

Multiple sequence alignment of 18 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   52-98     AP-EDTVQNRVTL-----EK---VLG-------ITAQNSS-----------GLTCDPGT---G---------HVAYLA---G--CVVVVLN
   WD 2  102-142    -N-K--------Q-----QH---IFN-------TTRKSLS-----------ALAFSPDG---K---------YIVTGE--NGHRPAVRIWD
   WD 3  146-186    -K-T--------Q-----VA---EML-------GHKYGVA-----------CVAFSPNM---K---------HIVSMGYQHD--MVLNVWD
   WD 4  189-226    -K-D--------I-----VV---ASN-------KVSCRVI-----------ALSFSEDS---S---------YFVTVG---N--RHVRFWF
   WD 5  247-281    -------------------I---LGE-------LHNNIFC-----------GVACGRGR---M---------AGNTFC--VS--YSGLLCQ
   WD 6  283-322    NE-K--------R-----VL---DKW-------INLKVSL-----------SSCLCVSD---E---------LIFCGC--TD--GIVRIFQ
   WD 7  344-388    HG-L---DSSFLF-----HR---KAE-------AVYPDTV-----------ALTFDPVH---Q---------WLSCVY--KD--HSIYIWD
   WD 8  389-442    VK-D--------IDEVSKIW---SEL-------FHSSFVW-----------NVEVYPEF---EDQRACLPSGTFLTCS--SD--NTIRFWN
   WD 9  483-521    -G-S--------E-----NG---TPM-------DMKAGVR-----------VMQVSPDG---Q---------HLASGD--RS--GNLRIHE
   WD10  525-566    -M-D--------E-----LI---KVE-------AHDAEVL-----------CLEYSKPETGVT---------LLASAS--RD--RLIHVLN
   WD11  572-610    ---N--------L-----EQ---TLD-------DHSSSIT-----------AIKFAGTR---D--------VQMISCG--AD--KSIYFRS
   WD12  611-657    AQ-Q--------A-----SD---GLHFVRTHHVAEKTTLY-----------DMDIDITQ---K---------YVAVAC--QD--RNVRVYN
   WD13  664-702    -K-K--------C-----YK---GSQ-------GDEGSLL-----------KVHVDPSG---T---------FLATSC--SD--KSISLID
   WD14  706-744    -G-E--------C-----VA---KMF-------GHSEIVT-----------GMKFTYDC---R---------HLITVS--GD--SCVFIWH
   WD15  745-796    LGPE--------I-----TT---CMK-------QHLLEINHQEQQQQPKDQKWSGPPSQ---E---------TYASTP--SE--IRSLSPG
   WD16  837-879    WA-K--------R-----LLGDDDVA-------DSSAFHA-----------KRSYQPHG---R---------WAERAE--QE--PLKTILD
   WD17  883-921    -L-D--------S-----YF---TPM-------KPENLQD-----------SVLDSVEP---Q---------NLAGLL--SE--CSLGNGH
   WD18  938-976    -G-S--------P-----KE---DNR-------GHPSYLP-----------LQREATEA---S---------ELILCS--PE--AEVSLTG

   WD40 Template    TG-E--------C-----LR---TLS-------GHTSGVT-----------SVSFSPDG---K---------RLVSGS--ED--GTIKVWD