Input parameters:

  Query = ENSMUSP00000116608 (Len=334)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000116608, Len=334):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFRRERSIPLRSSAAALSNNLSVLQLPARDLTHFGVVHGPSAQLLSAAPEGVPLAQRQLHVKEGAGVSPPLITQVHWCVL 80  
WD40-rpts                                  (_________________WD 1________________)             

Query       81 PFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASSVQAMFARGIAASVHFICVGTCSGRVLVFDIPAKGPNIVLSEEL 160 
WD40-rpts                                   (________________WD 2_______________)       (______

Query      161 AGHQTPITDIATERAQGQDGVADMVTADDSGVLCVWRSGPEFTLLTRIPGFGVPCPSVQLWQGIVAAGYGNGQVRLYDAS 240 
WD40-rpts      _____________WD 3___________________)(__________________WD 4_________________)  

Query      241 TGALHVQISAHARTISALDLAPEVGKLLSAAEDTFVHIWKLNRNPESGSIEVEHCHGECISDTQVCGARFCDPLGSSFAV 320 
WD40-rpts       (_________________WD 5________________)      (____________________WD 6_________

Query      321 TGYDLAEILRFGTV 334 
WD40-rpts      ___________)  

6 WD40-repeats found in QUERY=ENSMUSP00000116608 (Len=334):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    29-67       6.62  388.20  0.00036       12.5%     33.25
  WD 2:  Seg 10   110-146      6.43  380.46  0.00046       10.0%     40.20
  WD 3:  Seg 13   154-197      7.05  405.72  0.00021       20.0%     42.18
  WD 4:  Seg 17   198-238      6.12  367.43  0.00070       20.0%     54.35
  WD 5:  Seg 21   242-280      9.66  513.86  7.4e-06       22.5%     55.61
  WD 6:  Seg 24   287-332      3.29  250.59  0.02583       12.5%     49.66

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   29-67     -R---DLTHFGVVHGPSAQLLSA------APEGVP-----LAQRQLHVK-EGAGV
   WD 2  110-146    LD---S---GDASSVQAMFARGI------AASVHF-----ICVGTCSGR-VLVFD
   WD 3  154-197    -I---VLSEELAGHQTPITDIAT------ERAQGQDGVADMVTADDSGV-LCVWR
   WD 4  198-238    SGPEFTLLTRIPGFGVPCPSVQL------WQG--I-----VAAGYGNGQ-VRLYD
   WD 5  242-280    -G---ALHVQISAHARTISALDL------APEVGK-----LLSAAEDTF-VHIWK
   WD 6  287-332    -S---GSIEVEHCHGECISDTQVCGARFCDPLGSS-----FAVTGYDLAEILRFG

   WD40 Template    TG---ECLRTLSGHTSGVTSVSF------SPDGKR-----LVSGSEDGT-IKVWD