Input parameters:

  Query = ENSMUSP00000116496 (Len=342)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000116496, Len=342):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEQVLPELDVAELELQAVIGFNGHVPNGLKCHPDQEHLIYPLGCTVLIQAINTNEQNFLHGHGNNVSCVTISKEGDYIA 80  
WD40-rpts                   (________________WD 1________________)  (___________________WD 2___

Query       81 SGQVTFMGFKADIILWDFKKRELIARLSLHKGKIEALAFSPNDLYLVSLGGPDDGSVVVWSIAKRDAICGSPAAGLNVGN 160 
WD40-rpts      ________________)   (__________________WD 3_________________)(__________________

Query      161 ATSVVFSRCRDEMFVTAGNGTIRVWELDLPNRKIWPTECQTGQMKRIVLSTGMADDDSFFYLGTTTGDILKMNPKTKLLA 240 
WD40-rpts      __WD 4___________________)    (___________________WD 5__________________)      (

Query      241 DTGPVKDKFSLGVSALRCLKMGGLLVGSGAGLLIFCKSPSYKPIKKVQLQGGITSITLRGEGHQFFVGTEESHIYRVNFT 320 
WD40-rpts      ________________WD 6________________)(__________________WD 7_________________)  

Query      321 DFKETLIATCHFEAVQDIVFPL 342 
WD40-rpts                            

7 WD40-repeats found in QUERY=ENSMUSP00000116496 (Len=342):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    14-51       5.40  337.68  0.00175       12.5%     49.48
  WD 2:  Seg  5    54-97       7.48  423.81  0.00012       30.0%     52.34
  WD 3:  Seg  9   101-141      8.81  478.39  2.2e-05       37.5%     48.87
  WD 4:  Seg 13   142-186      8.08  448.41  5.6e-05       25.0%     44.16
  WD 5:  Seg 17   191-233      6.21  371.14  0.00062       17.5%     55.77
  WD 6:  Seg 21   240-277      5.78  353.56  0.00107       20.0%     45.62
  WD 7:  Seg 24   278-318      7.25  414.11  0.00016       17.5%     52.66

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-51     -LE-----LQAVIG-FNGHV----PNGLKCHPDQEHLIY--PL------GCTVLIQA
   WD 2   54-97     -TN-----EQNFLH-GHGNN----VSCVTISKEGDYIAS--GQVTFMGFKADIILWD
   WD 3  101-141    -RE-----LIARLS-LHKGK----IEALAFSPNDLYLVSLGGPD-----DGSVVVWS
   WD 4  142-186    IAKRDAICGSPAAG-LNVGN----ATSVVFSRCRDEMFV--TAG-----NGTIRVWE
   WD 5  191-233    -NR-----KIWPTE-CQTGQMKRIVLSTGMADDDSFFYL--GTT-----TGDILKMN
   WD 6  240-277    -AD-----TGPVKD-KFSLG----VSALRCLKMGGLLV---GSG-----AGLLIFCK
   WD 7  278-318    SPS-----YKPIKKVQLQGG----ITSITLRGEGHQFFV--GTE-----ESHIYRVN

   WD40 Template    TGE-----CLRTLS-GHTSG----VTSVSFSPDGKRLVS--GSE-----DGTIKVWD