Input parameters:

  Query = ENSMUSP00000116163 (Len=1232)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000116163, Len=1232):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALYFDHRIKAPDTPSSPSHITWHPTHPFLAVASISPSSGGNVDIYLEQGEPVPDTHIERSFQATSLCWHPTRLILAIGW 80  
WD40-rpts      (_____________________WD 1____________________)   (_________________WD 2________

Query       81 ETGEVIMFNKQDKEQHTVPLPHTTDIAILSWSTSGSCLVSGDKLGVLLLWRLDQRGRVQGTPLLKHEYGKALTHCIFRLP 160 
WD40-rpts      ________)   (_________________WD 3________________)                             

Query      161 PPGEDLVQLAKAAVSGDEKALDMFNWRKSSFGSFLKTGSQEGLSFFVSLMDGTVHYVDEKGKTAQVASTDSSIQTLFYIE 240 
WD40-rpts                         (_________________WD 4________________)(_________________WD 5

Query      241 RREALVVVTENLLLSLYVVTPEGEAEEVMKVKLSGKTGCRADITLIEGSLLVTAIGEPVLRFWDLERGENYILSLQEKFG 320 
WD40-rpts      _________________)       (_________________WD 6________________)          (_____

Query      321 FEKGESINCVCFCKAKGLLAAGTNKGRVAMWKKVPSFPNGRGAEGKDMWALQTPTELEGNITQIKWGSRKNLLAVSSTES 400 
WD40-rpts      ___________WD 7________________)                 (________________WD 8__________

Query      401 VSILSEQAMSSHFHQQVAAVQISPSLVNVSFLSTGGTHSLHTDMHISGVFATKDAVAVWNGKQVAIFEPSGSTLRNAGTF 480 
WD40-rpts      _____)                                                                          

Query      481 LCETSVLAMHEESIYTVEPNRLQVRTWQGTVKQLLLFSETEGSPCFLDVCGTFLVAGTDLAHFKSFDLSRREAKVHCSCK 560 
WD40-rpts                                  (_________________WD 9________________)         (___

Query      561 NLAQLVPDVGSITSLRCNANGNKISILLSKVNNSPDSKIYIYDVEMDTVNVFNFTTGQIGQIQTLPFNEPPTNETRSFMD 640 
WD40-rpts      __________________WD10____________________)                                     

Query      641 KSLAGYTPVNHFWDQSEPRLFVCEALQEAPGAQPQAVDKQPRVEEGTCHKEEVLILSFFASEEHGFLLHDSFPRPSTYQS 720 
WD40-rpts                                                                                      

Query      721 LLGMEVPHYYFTKKPGEADKEDRVDSGYYHIPQMVAKRPLRDFVGLEDCDKSTRDAMLNFSFFVTIGDMDEAFKSIKLIK 800 
WD40-rpts                                                                                      

Query      801 SEAVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAEQEPELEARVAMLAIQLGMLEEAEQLYKKCKRYDLLNKFY 880 
WD40-rpts                                                                                      

Query      881 QASDQWQKAVEVAELHDRVHLRTTYYNYAKHLEASADCGQALSYYEKSDTHRFEVPRMLSEDLQSLELYINRMKDKTLWR 960 
WD40-rpts                                                                                      

Query      961 WWAQYLESQAEMDTALRYYELAQDYFSLVRIHCFQGNIQKAAEIANETGDWAASYHLARQYESQDEVKQAVHFYTRAQAF 1040
WD40-rpts                                                                                      

Query     1041 NNAIRLCKENGLDDQLMNLALLSSPEDMIEAARYYEEKGEQMDRAVMLYHKAGHFSKALELAFTTQQFAALQLIAEDLDE 1120
WD40-rpts                                                                                      

Query     1121 KSDPALLARCSDFCIEHRQFEKAVELLLAAKKYHEALQLCLEQNMTITEDMAEKMTVSKDSKDMSEESRRELLEQIANCC 1200
WD40-rpts                                                                                      

Query     1201 MRQGNYHLATKKYTQAGNKLKAMRALLKSGDT 1232
WD40-rpts                                      

10 WD40-repeats found in QUERY=ENSMUSP00000116163 (Len=1232):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-47       3.93  276.88  0.01150       12.5%     46.57
  WD 2:  Seg  5    51-89       5.84  355.81  0.00100       20.0%     47.65
  WD 3:  Seg  8    93-131      7.35  418.33  0.00014       30.0%     48.83
  WD 4:  Seg 14   180-218      3.51  259.69  0.01954       17.5%     39.25
  WD 5:  Seg 18   219-258      5.93  359.47  0.00089       10.0%     55.66
  WD 6:  Seg 22   266-304      5.22  330.25  0.00220       17.5%     53.35
  WD 7:  Seg 27   315-352      4.70  308.63  0.00431       17.5%     45.42
  WD 8:  Seg 30   370-406      3.71  268.03  0.01511       12.5%     42.25
  WD 9:  Seg 43   509-547      4.70  308.63  0.00431       20.0%     46.43
  WD10:  Seg 47   557-603      3.13  244.11  0.03149       22.5%     35.15

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-47     MALYFDHRIKAPDTPSSPSHITWHPTHPFLA------VASISPSSGGNVDIYL
   WD 2   51-89     -E---PVPDTHIERSFQATSLCWHPTRLILA------IGW----ETGEVIMFN
   WD 3   93-131    -K---EQHTVPLPHTTDIAILSWSTSGSCLV------SGD----KLGVLLLWR
   WD 4  180-218    -A---LDMFNWRKSSFGSFLKTGSQEGLSFF------VSL----MDGTVHYVD
   WD 5  219-258    EK---GKTAQVASTDSSIQTLFYIERREALV------VVT----ENLLLSLYV
   WD 6  266-304    -E---EVMKVKLSGKTGCRADITLIEGSLLV------TAI----GEPVLRFWD
   WD 7  315-352    LQ---E--KFGFEKGESINCVCFCKAKGLLA------AGT----NKGRVAMWK
   WD 8  370-406    ------ALQTPTELEGNITQIKWGSRKNLLA------VSS----TESVSILSE
   WD 9  509-547    -G---TVKQLLLFSETEGSPCFLDVCGTFLV------AGT----DLAHFKSFD
   WD10  557-603    CS--CKNLAQLVPDVGSITSLRCNANGNKISILLSKVNNS----PDSKIYIYD

   WD40 Template    TG---ECLRTLSGHTSGVTSVSFSPDGKRLV------SGS----EDGTIKVWD