Input parameters:

  Query = ENSMUSP00000116139 (Len=1053)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000116139, Len=1053):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 SDTRWQKNIFSDSLLKVVYVENDIQHLQDLSHFPDRGSENGTPMDMKAGVRVMQVSPDGQHLASGDRSGNLRIHELHFMD 80  
WD40-rpts                                          (_________________WD 1________________)   (_

Query       81 ELIKVEAHDAEVLCLEYSKPETGVTLLASASRDRLIHVLNVEKNYNLEQTLDDHSSSITAIKFAGTRDVQMISCGADKSI 160 
WD40-rpts      _________________WD 2__________________)(___________________WD 3________________

Query      161 YFRSAQQASDGLHFVRTHHVAEKTTLYDMDIDITQKYVAVACQDRNVRVYNTVSGKQKKCYKGSQGDEGSLLKVHVDPSG 240 
WD40-rpts      ___)(_____________________WD 4____________________)      (_________________WD 5_

Query      241 TFLATSCSDKSISLIDFYSGECVAKMFGHSEIVTGMKFTYDCRHLITVSGDSCVFIWHLGPEITTCMKQHLLEINHQEQQ 320 
WD40-rpts      _______________)   (_________________WD 6________________)(___________________WD

Query      321 QQPKDQKWSGPPSQETYASTPSEIRSLSPGEQTEDEMEEECEPEELLKTPSKDSLDPDPRCLLTNGKLPLWAKRLLGDDD 400 
WD40-rpts       7__________________)                                           (_______________

Query      401 VADSSAFHAKRSYQPHGRWAERAEQEPLKTILDAWSLDSYFTPMKPENLQDSVLDSVEPQNLAGLLSELGSPKEDNRGHP 480 
WD40-rpts      _______WD 8_____________________)   (_________________WD 9________________)     

Query      481 SYLPLQREATEASELILCSPEAEVSLTGMHREYYEEETEAGPEDQQGDTYLRVSSVSSKDQSPPEDSGESEAELECSFAA 560 
WD40-rpts                                                                                      

Query      561 AHSSAPQTDPGPHLTMTAEYPSTEELSQPELPGLGNGSLPQTPEQEKFLRHHFETLTDAPTEELFHGSLGDIKISETEDY 640 
WD40-rpts                                                                                      

Query      641 FFNPRLSISTQFLSRLQKTSRCPPRLPLHLMKSPEAQPVGQGGNQPKAGPLRAGTGYMSSDGTNVLSGQKAEETQEALSL 720 
WD40-rpts                                                                                      

Query      721 LDRKPPTPTSVLTTGREQSISAPSSCSYLESTTSSHAKTTRSISLGDSEGPVTAELPQSLHKPLSPGQELQAIPTTVALT 800 
WD40-rpts                                                                                      

Query      801 SSIKDHEPAPLSWGNHEARASLKLTLSSVCEQLLSPPPQEPPITHVWSQEPVDVPPSMAVTVASFCAPSPVDMSTLGLHS 880 
WD40-rpts                                                                                      

Query      881 SMFLPKTSASGPLTPPAHLQLLETRSRVPGSTAALLEPTPDASGVIADSPGHWDTEVPTPELLGSVESVLHRLQTAFQEA 960 
WD40-rpts                                                                                      

Query      961 LDLYRMLVSSSQLGPEQQQAQTELASTFHWILNQLEASNCMAAANLAPPQTLPSPDPLSLPTLCPLASPNLQALLEHYSE 1040
WD40-rpts                                                                                      

Query     1041 LLVQAVRRKARGD 1053
WD40-rpts                   

9 WD40-repeats found in QUERY=ENSMUSP00000116139 (Len=1053):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    37-75       7.83  437.90  7.8e-05       30.0%     44.57
  WD 2:  Seg  7    79-120      6.36  377.35  0.00051       25.0%     55.78
  WD 3:  Seg 11   121-164      6.32  375.88  0.00053       22.5%     47.31
  WD 4:  Seg 14   165-211      5.02  321.92  0.00285       10.0%     45.63
  WD 5:  Seg 18   218-256      7.28  415.32  0.00016       22.5%     49.42
  WD 6:  Seg 22   260-298      9.19  494.36  1.4e-05       32.5%     55.64
  WD 7:  Seg 26   299-341      4.30  292.10  0.00719       12.5%     24.60
  WD 8:  Seg 31   385-433      5.27  332.42  0.00206       12.5%     30.61
  WD 9:  Seg 34   437-475      4.95  319.27  0.00310       15.0%      4.47

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   37-75     -G-S---EN---------GTPM-------DMKAGVR--VMQVSPDGQ---HLASGDRSGNLRIHE
   WD 2   79-120    -M-D---EL---------IKVE-------AHDAEVL--CLEYSKPETGVTLLASASRDRLIHVLN
   WD 3  121-164    VE-KNYNLE---------QTLD-------DHSSSIT--AIKFAGTRD--VQMISCGADKSIYFRS
   WD 4  165-211    AQ-Q---AS---------DGLHFVRTHHVAEKTTLY--DMDIDITQK---YVAVACQDRNVRVYN
   WD 5  218-256    -K-K---CY---------KGSQ-------GDEGSLL--KVHVDPSGT---FLATSCSDKSISLID
   WD 6  260-298    -G-E---CV---------AKMF-------GHSEIVT--GMKFTYDCR---HLITVSGDSCVFIWH
   WD 7  299-341    LGPE---IT---------TCMK-------QHLLEINHQEQQQQPKDQ---KWSGPPSQETYASTP
   WD 8  385-433    NG-K---LPLWAKRLLGDDDVA-------DSSAFHA--KRSYQPHGR---WAERAEQEPLKTILD
   WD 9  437-475    -L-D---SY---------FTPM-------KPENLQD--SVLDSVEPQ---NLAGLLSELGSPKED

   WD40 Template    TG-E---CL---------RTLS-------GHTSGVT--SVSFSPDGK---RLVSGSEDGTIKVWD