Input parameters:

  Query = ENSMUSP00000115011 (Len=442)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000115011, Len=442):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MELPQMPELMGLSLLVGLLALVATAAVARGWLRAEEKPSQPVCQKENEPKKSGSKKQKQNQRVRKEKPQQHSFTHPLLAA 80  
WD40-rpts                                  (_________________WD 1________________)_____________

Query       81 ALKSHSGNISCMDFSSNGKYLATCADDRTVRIWSTKDFLQREHRSMRANVELDHATLVRFSPDCRAFIVWLANGDTLRVF 160 
WD40-rpts      ________WD 2_____________________)(_____________________WD 3____________________

Query      161 KMTKREDGGFTFTATPEDFPKKHKAPIINIGIADTGKFIMTASSDTTVLIWNLKGQVLSTINTNQMNNSHAVISPCSRFV 240 
WD40-rpts      )            (_________________WD 4________________)  (_________________WD 5____

Query      241 GSCGFTPDVKVWEVCFGKKGEFQEVLRAFELKGHSASVHSFAFSNDSRRMASVSKDGTWKLWDTDVEYKKQQDPYLLRTG 320 
WD40-rpts      ____________)           (_________________WD 6________________)     (___________

Query      321 RFEEASTMPCRLALSPDTHVLALATGTNIHLFNTRRGEKEEYFECVHGECIADLTFDITGRFLASCGDRAVRLFHNTPGH 400 
WD40-rpts      _________WD 7___________________)   (_________________WD 8________________)     

Query      401 RAVVEEMQSLLKRASSESTRQRLQQQLTQAQEALKSLGALKK 442 
WD40-rpts                                                

8 WD40-repeats found in QUERY=ENSMUSP00000115011 (Len=442):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    29-67       7.31  416.76  0.00015       12.5%     27.92
  WD 2:  Seg  4    67-114      9.21  495.13  1.3e-05       25.0%     47.22
  WD 3:  Seg  7   115-161      6.87  398.51  0.00026       27.5%     49.55
  WD 4:  Seg 11   174-212      9.24  496.25  1.3e-05       17.5%     44.42
  WD 5:  Seg 14   215-253      8.98  485.79  1.8e-05       22.5%     55.21
  WD 6:  Seg 18   265-303      9.47  505.87  9.5e-06       42.5%     47.26
  WD 7:  Seg 21   309-353      6.07  365.23  0.00074       12.5%     51.18
  WD 8:  Seg 25   357-395      6.29  374.64  0.00056       20.0%     52.69

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   29-67     RG---------WLR------AEEK-PSQPVCQKENEPKKS-GSKKQKQNQRVRKEK
   WD 2   67-114    KPQQHSFTHPLLAA------ALKS-HSGNISCMDFSSNGK-YLATCADDRTVRIWS
   WD 3  115-161    TKD--------FLQREHRSMRANV-ELDHATLVRFSPDCRAFIVWLANGDTLRVFK
   WD 4  174-212    -AT--------PED------FPKK-HKAPIINIGIADTGK-FIMTASSDTTVLIWN
   WD 5  215-253    -GQ--------VLS------TINT-NQMNNSHAVISPCSR-FVGSCGFTPDVKVWE
   WD 6  265-303    -VL--------RAF------ELKG-HSASVHSFAFSNDSR-RMASVSKDGTWKLWD
   WD 7  309-353    KKQ--QDPYLLRTG------RFEE-ASTMPCRLALSPDTH-VLALAT-GTNIHLFN
   WD 8  357-395    -GE--------KEE------YFECVHGECIADLTFDITGR-FLASCG-DRAVRLFH

   WD40 Template    TGE--------CLR------TLSG-HTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD