Input parameters:

  Query = ENSMUSP00000114968 (Len=513)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000114968, Len=513):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVEEVQKHSVHTLVFRSLKRTHDMFVADNGKPVPLDEESHKRKMAIKLRNEYGPVLHMPTSKENLKEKGPQNATDSYPHK 80  
WD40-rpts                                                                                      

Query       81 QYPANQGQDVEYLVTGTHPYPAGPGVALTADTKIQRMPSESAAQSLAVALPSQTRVDANRTGPAGSEYRHPGASDRSQPT 160 
WD40-rpts                                  (_________________WD 1_________________)   (________

Query      161 AMNSIMETGNTKNSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLS 240 
WD40-rpts      _________WD 2________________)  (_________________WD 3________________)   (_____

Query      241 LTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTLDVLVTCSRDSTARIWDVRTKA 320 
WD40-rpts      ____________WD 4________________)   (_________________WD 5________________)   (_

Query      321 SVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPLLYTFASGSPDNIKQWKFP 400 
WD40-rpts      ________________WD 6________________)   (________________WD 7________________)  

Query      401 DGGFIQNLSGHNAIINTLAVNADGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDRSESRLLTAE 480 
WD40-rpts       (________________WD 8________________)           (_________________WD 9________

Query      481 ADKTIKVYREDETATEETHPVSWKPEIIKRKRF 513 
WD40-rpts      ________)                        

9 WD40-repeats found in QUERY=ENSMUSP00000114968 (Len=513):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   109-148      6.36  377.23  0.00051       12.5%     27.94
  WD 2:  Seg  7   152-190      7.32  417.10  0.00015        7.5%     33.12
  WD 3:  Seg  9   193-231      9.69  514.74  7.2e-06       37.5%     53.50
  WD 4:  Seg 13   235-273      9.60  511.24  8.0e-06       37.5%     55.64
  WD 5:  Seg 17   277-315      9.55  509.25  8.5e-06       32.5%     56.29
  WD 6:  Seg 21   319-357     10.00  527.66  4.8e-06       37.5%     54.80
  WD 7:  Seg 25   361-398      7.86  439.50  7.4e-05       35.0%     53.32
  WD 8:  Seg 29   402-439      8.73  475.19  2.5e-05       37.5%     53.96
  WD 9:  Seg 34   451-489      7.92  441.63  6.9e-05       25.0%     37.93

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  109-148    TADTKIQRMPSESAAQSLAVALPSQTRVDANRTGPAGSEY
   WD 2  152-190    -GASDRSQPTAMNSIMETGNTKNSALMAKKAPTMPKPQWH
   WD 3  193-231    -WKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWD
   WD 4  235-273    -GKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWD
   WD 5  277-315    -NKVIRHYHGHLSAVYGLDLHPTLDVLVTCSRDSTARIWD
   WD 6  319-357    -KASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWD
   WD 7  361-398    -GKTRVTLTNHKKSVRAVVLHPLLYTFASGSPD-NIKQWK
   WD 8  402-439    -GGFIQNLSGHNAIINTLAVNADG-VLVSGADNGTMHLWD
   WD 9  451-489    -AAVQPGSLDSESGIFACAFDRSESRLLTAEADKTIKVYR

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD