Input parameters:

  Query = ENSMUSP00000114660 (Len=1073)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000114660, Len=1073):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XAVAASERCSWLVPLVRTLLDRAYGPLGLQWGLPSLPPTNGSPTFFEDFQAFCATAEWRHFIDKQVQPTMSKFEMDTYAK 80  
WD40-rpts                                                                                      

Query       81 SHDLMSGFWNACYDTLMSSGQRHQRDRIQSRRAFKELVLEPAQRRARVEGLRYASVLKQQAAQHSTALLHWGALWRQLSS 160 
WD40-rpts                                                                                      

Query      161 PCGAWALRIPPAPHWKLSSAETYSRMRLKLVPNHHFDPHLEASALRDNLGEAPMTPTEETSLPLAVTKEAKISAPPEELP 240 
WD40-rpts                                                                                      

Query      241 EEQLGEEDLAALESLMEEAAELDEKREKLVLSAECQLVTVVAVVPGLLEITTQHVYFYDGSTERVETEEGIGHDFRRPLA 320 
WD40-rpts                                                                                      

Query      321 QLREVHLRRFNLRRSALELFFIDQSNYFLNFPHKVAASSASSPCQAPRPQLYPIPSHTQLRNQVYSLLLRLRPPTQGYLS 400 
WD40-rpts                                                                                      

Query      401 SRSPLEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPVLDLSNPAVFRDLSKPIGVVNP 480 
WD40-rpts                                                                                      

Query      481 KHAQLVREKYESFEDPAGTIDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPAD 560 
WD40-rpts                                                                                      

Query      561 VKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWAGSPEDFIQKHRQALESEYVSTHLHEWIDLIFGYKQRGP 640 
WD40-rpts                                                                                      

Query      641 AAEEALNVFYYCTYEGAVDLDHVADERERKALEGIISNFGQTPCQLLKEPHPPRLSAEEAANRLARLDTNSPSIFQNLNQ 720 
WD40-rpts                                                                                      

Query      721 LKAFFAEVTVSASGLLGTHTWLPYDRNINNYFTFSKDPTMGSPKVQKLLSGPWVSDSGVSAQALAVAPDGKLLFSGGHWD 800 
WD40-rpts                                                                                      

Query      801 GSLRVTSLPRGRLLNQLSRHLDIVTCLALDTCGIYLISGSRDTTCMVWRLLQQSGLSAGLAPKPVQVLYGHVAAVSCVAI 880 
WD40-rpts                (_________________WD 1________________)            (_________________W

Query      881 STELDMAVSGSEDGTVIIHTVRRGQFVAALRPPGATLPGPISHLALGAEGQIVVQSSACERPGAQVTYSLHLYSVNGRLR 960 
WD40-rpts      D 2________________)                                                            

Query      961 ASVTLTEQPTALTVAEDFVLLGTAQCSLHILHLNKLRPAVPPLPMKVPVHSVSVTKERSHVLVGLEDGKLIVVGAGQPSE 1040
WD40-rpts                                      (__________________WD 3__________________)      

Query     1041 VRSSQFARRLWRSSRRISQVSSGETEYNPGEAR 1073
WD40-rpts                                       

3 WD40-repeats found in QUERY=ENSMUSP00000114660 (Len=1073):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   811-849      6.66  389.79  0.00035       40.0%     54.53
  WD 2:  Seg 17   862-900      5.54  343.58  0.00146       35.0%     56.03
  WD 3:  Seg 29   993-1034     3.90  275.79  0.01189       22.5%     43.81

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  811-849    -GRL--LNQLSRHLDIVTCLALDTCGIYLISGSRDTTCMVWR
   WD 2  862-900    -PKP--VQVLYGHVAAVSCVAISTELDMAVSGSEDGTVIIHT
   WD 3  993-1034   LNKLRPAVPPLPMKVPVHSVSVTKERSHVLVGLEDGKLIVVG

   WD40 Template    TGEC--LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD