Input parameters:

  Query = ENSMUSP00000114296 (Len=768)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000114296, Len=768):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEPDTATEAATVAVSDARATVVVVEDEQPGPSTFKEEGAAAAATEGTTATEKGEKKEKITSPFQLKLAAKASKSEKEMDP 80  
WD40-rpts                                                                                      

Query       81 EYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLARPRVKKDDKQSLISVGDYRHRRTEQEEDEELLSES 160 
WD40-rpts                                                                                      

Query      161 RKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPK 240 
WD40-rpts                                                                                      

Query      241 STLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKS 320 
WD40-rpts                                                                                      

Query      321 KLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKT 400 
WD40-rpts                                                                                      

Query      401 DVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHI 480 
WD40-rpts                                                                                      

Query      481 VGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREDKFLEVELLGQREAIDAFN 560 
WD40-rpts                                                 (________________________________WD 1

Query      561 APNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLR 640 
WD40-rpts      _______________________________)                                                

Query      641 LDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFACKESELTDEDIVTILERGEKKTAEMNERMQKMGESSLRNFRMD 720 
WD40-rpts                                                                                      

Query      721 LEQSLYKFEGEDYREKQKLGTVEWIEPPKRERKANYAVDAYFREALRV 768 
WD40-rpts                                                      

1 WD40-repeats found in QUERY=ENSMUSP00000114296 (Len=768):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   524-592      2.97  237.23  0.03884       22.5%     30.85

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  524-592    RGYEYSRLDGQTPHEEREDKFLEVELLGQREAIDAFNAPNSSKFIFMLSTRAGGLGINLASAD-VVILYD

   WD40 Template    TGECLRTLSGHTS------------------------------GVTSVSFSPDGKRLVSGSEDGTIKVWD