Input parameters:

  Query = ENSMUSP00000114285 (Len=1318)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000114285, Len=1318):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASCASIDIEDATQHLRDILKLDRPAGGSNAESQRPSSAYNGDLNGLLVPDPLSSGDGNSTNKPGIRTMPPINLQEKQVI 80  
WD40-rpts                                                                                      

Query       81 CLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKIQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVR 160 
WD40-rpts                                                                                      

Query      161 VISVSTSERTLLKGFTGSVADLAFAHLNSPQLACLDEAGNLFVWRLALVKGKIQEEILVHIRQPEGTALNHFRRIIWCPF 240 
WD40-rpts         (__________________WD 1__________________)                                   

Query      241 IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHNTWPVDVSQIKQGFIVVKGHSTCLSEGALSPDGTVLATASHDGF 320 
WD40-rpts                                      (________________________WD 2___________________

Query      321 VKFWQIYIEGQDEPSFSPDIFSSVSVPPSLKVCLDLSAEYLILSDVQRKVLYVMELLQNQDEGRACFSSISEFLLTHPVL 400 
WD40-rpts      ____)                                                                           

Query      401 SFGIQVVSRCRLRHTEVLPAEEENDSLGTESSHGAGALESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLSTHTA 480 
WD40-rpts                                                                                      

Query      481 HEDFTFGESRPELGSEGLASAAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFMTPTASLQQISASPSSSSSSSS 560 
WD40-rpts                                                                                      

Query      561 SSSSSSSSSSSSLTAVSAVSSSSAMDPSLPRPPEELTLSPKLQLDGSLTLNSSSSSLQASPRSLLPGLLPGPADKLISKG 640 
WD40-rpts                                                                                      

Query      641 PGQVSTAASALSLDLQEVEPLGLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSVPEGLIEPDSMASAASA 720 
WD40-rpts                                                                                      

Query      721 LHLLSPRPRQGPELGSQLGLDGGPGDGDRHSTPSLLEAALTQEVATPDSQVWPTAPDITRETCSTLTERNGLQEKHKSLA 800 
WD40-rpts                                                                                      

Query      801 FHRPPYHLLQQRDSQDTSAEQSDHDDEVASLASASGGFGSKIPTPRLPSKDWKTKGSPRTSPKLKRKSKKDDGDSAVGSR 880 
WD40-rpts                                                                                      

Query      881 LTEHQVAEPPEDWPALIWQQQRELAELWHNQEELLQRLCAQLEGLQSTVTDHVERALETRHEQERILGVVAQHGKRRLER 960 
WD40-rpts                                                                                      

Query      961 ALAEGQQRGGQLQEQLTQQLSQALSSAVAGRLERSVRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVEGSMKENISK 1040
WD40-rpts                                                                                      

Query     1041 LLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQINDSFRLGTQEYLQQLESHMKSRKAREQEAR 1120
WD40-rpts                                                                                      

Query     1121 EPVLAQLRGLVSTLQSATEQMAATVSSSVRAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMR 1200
WD40-rpts                                                                                      

Query     1201 SAAGTPVPSAHLDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQPVLLSLIQQLAS 1280
WD40-rpts                                                                                      

Query     1281 DLGTRSDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQG 1318
WD40-rpts                                            

2 WD40-repeats found in QUERY=ENSMUSP00000114285 (Len=1318):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   164-205      5.82  355.13  0.00102       30.0%     41.46
  WD 2:  Seg 15   273-325      7.24  413.54  0.00017       30.0%     42.75

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  164-205    VS-------------TSERTLLKGFTGSVADLAFAHLNSPQLACLDEAGNLFVWR
   WD 2  273-325    RSSHNTWPVDVSQIKQGFIV-VKGHSTCLSEGALS-PDGTVLATASHDGFVKFWQ

   WD40 Template    TG-------------ECLRT-LSGHTSGVTSVSFS-PDGKRLVSGSEDGTIKVWD