Input parameters:

  Query = ENSMUSP00000114203 (Len=493)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000114203, Len=493):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDQDYERRLLRQIIIQNENTVPCVSEMRRTLTPANSPVSSPSKHGDRFIPSRAGANWSVNFHRINENEKSPSQNRKAKDA 80  
WD40-rpts                                                                                      

Query       81 TSDNGKDGLAYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEHKGLFTYSLSSKRSSPDDGNDVSPYSLSPVSNKSQKL 160 
WD40-rpts                         (_____________WD 1_____________)   (_________________WD 2____

Query      161 LRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSER 240 
WD40-rpts      ____________)                                        (___________________WD 3___

Query      241 GNLVAVGTHKGFVQIWDAAAGKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLK 320 
WD40-rpts      ________________)   (________________WD 4_______________)(___________________WD 

Query      321 WSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLTGQPLQCIDTGS 400 
WD40-rpts      5___________________)   (__________________WD 6__________________)   (__________

Query      401 QVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKTRSTK 480 
WD40-rpts      _______WD 7_________________)   (_________________WD 8________________)         

Query      481 ESVSVLNLFTRIR 493 
WD40-rpts                   

8 WD40-repeats found in QUERY=ENSMUSP00000114203 (Len=493):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   100-131      3.62  264.00  0.01711       10.0%      4.62
  WD 2:  Seg  3   135-173      5.17  328.13  0.00235       12.5%     20.43
  WD 3:  Seg  9   214-257      8.15  451.32  5.1e-05       32.5%     53.42
  WD 4:  Seg 13   261-297      7.11  408.55  0.00019       37.5%     50.45
  WD 5:  Seg 17   298-341      9.00  486.35  1.7e-05       32.5%     51.58
  WD 6:  Seg 21   345-386      7.10  407.86  0.00020       22.5%     41.05
  WD 7:  Seg 25   390-429      5.53  343.11  0.00148       30.0%     49.50
  WD 8:  Seg 29   433-471      9.49  506.55  9.3e-06       32.5%     54.03

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  100-131    ----------------LGAGIEKVQDPQTEDRRLQPS---TPEHKGLFTYS
   WD 2  135-173    -K----RS----SPDDGNDVSPYSLSPVSNKSQKLLR---SPRKPTRKISK
   WD 3  214-257    AC----TSQVTRLCDLSVEGDSVTSVGWSERGNLVAV---GTHKGFVQIWD
   WD 4  261-297    -G----KK----LSMLEGHTARVGALAWNAD--QLSS---GSRDRMILQRD
   WD 5  298-341    IRTPPLQS----ERRLQGHRQEVCGLKWSTDHQLLAS---GGNDNKLLVWN
   WD 6  345-386    -L----SP----VQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWN
   WD 7  390-429    -G----QP----LQCIDTG-SQVCNLAWSKHANELVS-THGYSQNQILVWK
   WD 8  433-471    -L----TQ----VAKLTGHSYRVLYLAMSPDGEAIVT---GAGDETLRFWN

   WD40 Template    TG----EC----LRTLSGHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD