WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000113908 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000113908 (Len=1843) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000113908, Len=1843): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKEPDDQDTSDGGRSGSRNEGKLAHKSILKSSQDTTADSYTDGEESYLGDDLDLDDMDESSHSSQEYVQAPAPSQEPPVE 80
WD40-rpts (_________________WD 1_________________)
Query 81 VKEEPEADVKKVLSETFYYDYPELVSIPYVSSEERIPLYFLTLNHSFGYDCRKRANLQLLDSNTLLYVAGNQMVLLDFKD 160
WD40-rpts
Query 161 KTQIYLQSSSGQGIGAIGVHPKKTYFAVAEKGSFPKIIIYEYPSLKPYRILRDGAEKAYAYVDFNNEGNLLASVGCHPDY 240
WD40-rpts (_________________WD 2________________) (____________________WD 3______________
Query 241 TITIWGWKEEQPILRTKAFSQDVFKVTFNPDNDEQLTTSGSGHIKFWEMAFTFTGLKLQGSLGRFGKTSTSDIEGYAELP 320
WD40-rpts _____) (_________________WD 4________________) (________________WD 5
Query 321 DGKVLSGSEWGNLLLWEGSLIKVELCRTGMKSCHSGSINQIMLDEGEVITAGSDGSVRIWDFETIDTADVIDDTGLLEIE 400
WD40-rpts ________________) (______________WD 6______________)
Query 401 PINELHIDKSVNLFSMIKMNEVGNNFWLAQDANGAIWKLDLSFSNITQDPECLFSFHSGPIAALAVSPLTYLMATTAMDC 480
WD40-rpts (_________________WD 7___________
Query 481 SVRVYDFSSKNPLVHMKFKQGGTSLIWAPRSVSVSASQIVVGFQDGVVRVLELFDPKGLTVYAGRKKIPDAELHLKYVFK 560
WD40-rpts _____)(____________________WD 8____________________) (_________________
Query 561 PHTDEVTALAYERDGDILATGSEDKTVFFFDVEKEYKPIGFFNTPGPICQLMWSPASHPEKTLLIICENGYILESLCPTI 640
WD40-rpts _____WD 9_____________________)
Query 641 KDVDDQNVITFAIPNVFLRCFHFTSVKSKILRFLEVQRREQQKMLKEKEKLERRMKLAEEREAFGEEEIPEEETSEEGEE 720
WD40-rpts
Query 721 EEPPLPEIFMPPTPSPILCGFYSEPGKFWVSLGNYDAGFLYHCQFPSYLHNSDFQKQENEPFDFRVLENTEDNPIRNITF 800
WD40-rpts (_____________
Query 801 SNDQTMMFCGMTNGAIRVYVLSENDPFLVSLQHYWHFNVHDNNYGSIKSITSSFDDQYLLTAGEDGNIFVFDIFSEFIVP 880
WD40-rpts _WD10______________)(_______________________WD11_______________________)
Query 881 KGIKAKVPSPRFGIESEAAPEDIEDPKAYSIENARKKREHDKLMKKVEELKAHKREQIKILRNEFWKLLELNKELPAHMQ 960
WD40-rpts
Query 961 FQRTDFNIDAKIHAEIHKKTSLKIEQVEKELAWEKQKHELGLKKLQDRFREPLESDTIVVYATQSDHQIASYRLVKPSKY 1040
WD40-rpts
Query 1041 SKLKRPSQSERRQSKMERLEKEGPGKKESQRDTGGSISLQEESVLEKGKKFRPRTLSEIMVENQIEKTKKLIQQAERAQF 1120
WD40-rpts
Query 1121 KILQRKKEWEELYKSKPDDDYEDPKDVQAIKEAQTYMGDFNLKTAPDYKIPEHMRINAAKKEEELGYLDTMAHGKKRYMN 1200
WD40-rpts
Query 1201 KCILSLRDLKLAVIEEIQCLVQELKNIQSSIPASKHMPIPQVPQIYPEEVPERRFQYDEETLLRFQRKQKKRQDKSSSKQ 1280
WD40-rpts
Query 1281 SGTGSGGSAGGGLVGFLKLSSGKEGDLTTRDSLSRSSKASALLELPKPVEFEKAEPSDAELEIMKRDEVKHLYMQQFLCN 1360
WD40-rpts
Query 1361 RINELTVTFDAELHLLRHQKLKLDTKMKLSDLHHLTLFQEMLLLKNFEKQENILQERVNSLDKEEQDMQWKINETLKEME 1440
WD40-rpts
Query 1441 EKKNEITKLQDQEKALYAGFQAALGENNKFANFLMKVLKKKIKRAKKKEVEGDADEDEESEESSEEESSLESDEDASGSE 1520
WD40-rpts
Query 1521 DDVFDDSICPTNCDVSLFELALQLREKRLDIEEALVEEKKIVDNLKKEYDTISKKVKVVATNLNAAEEALEAYQREKQQR 1600
WD40-rpts
Query 1601 LNELLVVIPLKLHQIEYMEFGEVPEDLSGTLVFSNHSLDRLQERIVQLQEENAKQQKLNKECRERRKLLIREKREMAKTI 1680
WD40-rpts
Query 1681 SKMEETVRELMISKFGRVIDLEALQTLSVNTTLEELKIKKLRKELSNAKELRMWEEKIAQVRWDLMMKTKEHTKKLHQMN 1760
WD40-rpts
Query 1761 DLCLEKKKLDSRLNTLQNQQGNAFQGLRKADIVAKQKVTELVQTQLEKITALKEEIELLRKKGGLLLPPITPKPKNEMKP 1840
WD40-rpts
Query 1841 MDT 1843
WD40-rpts
 11 WD40-repeats found in QUERY=ENSMUSP00000113908 (Len=1843): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 12-51 5.31 334.13 0.00195 12.5% 8.25 WD 2: Seg 6 161-199 3.39 254.52 0.02290 10.0% 53.23 WD 3: Seg 10 202-246 4.43 297.72 0.00604 25.0% 43.43 WD 4: Seg 14 250-288 6.06 364.78 0.00075 25.0% 54.45 WD 5: Seg 18 300-337 4.35 294.26 0.00672 35.0% 43.82 WD 6: Seg 22 348-381 4.61 305.06 0.00481 22.5% 46.45 WD 7: Seg 28 448-486 6.19 370.44 0.00063 17.5% 52.71 WD 8: Seg 32 487-532 4.01 280.37 0.01033 20.0% 32.20 WD 9: Seg 37 543-591 7.22 412.79 0.00017 35.0% 49.92 WD10: Seg 55 787-820 4.04 281.45 0.00999 17.5% 45.18 WD11: Seg 58 821-872 5.22 330.24 0.00220 27.5% 51.78Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 12-51 GG---------R------------S---GSRNE------GKLAHKSILKSSQDTTADSY--TDGEESYLGDD WD 2 161-199 -K---------T------------Q---IYLQS------SSGQGIGAIGVHPKKTYFAV--AEKGSFPKIII WD 3 202-246 YP---------S------------LKPYRILRD------GAEKAYAYVDFNNEGNLLASVGCHPDYTITIWG WD 4 250-288 -E---------Q------------P---ILRTK------AFSQDVFKVTFNPDNDEQLT--TSGSGHIKFWE WD 5 300-337 -G---------S------------L---GRFGK------TSTSDIEGYAELPDGK-VLS--GSEWGNLLLWE WD 6 348-381 TG----------------------------MKS------CHSGSINQIML--DEGEVIT--AGSDGSVRIWD WD 7 448-486 -Q---------D------------P---ECLFS------FHSGPIAALAVSPLTYLMAT--TAMDCSVRVYD WD 8 487-532 FS---------S------------K---NPLVHMKFKQGGTSLIWAPRSVSVSASQIVV--GFQDGVVRVLE WD 9 543-591 AGRKKIPDAELH------------L---KYVFK------PHTDEVTALAYERDGDILAT--GSEDKTVFFFD WD10 787-820 ------------------------------LEN------TEDNPIRNITFSNDQTMMFC--GMTNGAIRVYV WD11 821-872 LS---------ENDPFLVSLQHYWH---FNVHD------NNYGSIKSITSSFDDQYLLT--AGEDGNIFVFD WD40 Template TG---------E------------C---LRTLS------GHTSGVTSVSFSPDGKRLVS--GSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |