Input parameters:

  Query = ENSMUSP00000113792 (Len=1100)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000113792, Len=1100):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTLQELVLRTASVYMDRTAVCFDEGNNQPPVCYSYKALLSAASELSHFLIAHCDFGGIREIGLYCQPGINLPSWILGILQ 80  
WD40-rpts                                                                                      

Query       81 VPAAYAPIDPDSPPSLSTYFMKKCDLKYVLVEKQQLSKFKSSHETVLNYDTVSVEHKDLALFRLHWEDGRVSTVLGDRAD 160 
WD40-rpts                                                                                      

Query      161 QHKVTDREDRVSAESRTPEKEHMDMRHDGCLAYVLHTSGTTGTPKIVRVPHACILPNIQHFRSLFDITQEDILFLASPLT 240 
WD40-rpts                                                                                      

Query      241 FDPSVVEIFVSLSSGACLLIVPTSVKVLPSKLADILFSRHRVTVLQATPTLLRRFGSELIKSTVLSAHTSLRVLALGGEA 320 
WD40-rpts                                                                                      

Query      321 FPSLTILKSWRGKGNRTQIFNIYGITEVSSWATFYRIPEEILNSAVKHESPVQLGSPLLGTVIEVRDQNGSPVLEGTGQV 400 
WD40-rpts                                                                                      

Query      401 FLGGKNRVCFLDDEMTVPLGTMRATGDFVTVKDGEIFFLGRKDSQIKRHGKRLNIALVQQVAEELRQVESCAVTWYNQER 480 
WD40-rpts                                                                                      

Query      481 LILFIVSKVDLVKDCIFKELQKHLPAHALPDDMVLIDTLPFTCHGKVDVSELNKIYLDYISSQPRNELHGKEELWGKLQY 560 
WD40-rpts                                                                                      

Query      561 LWKSILCLPEDPEDTLKVPANSVFLDSGGDSLKSMRLLSEIERLTGTAIPGLLEVILSSSLLDVYNHIVQAVFTPEDRKA 640 
WD40-rpts                                                                                      

Query      641 NRSYTTKRKFSDADPEEASGKPARLESAWPSNHAGETNSVIALSRGSQVLSLGAGRLLTQLGLCLPVCSLDLIPQTNTQI 720 
WD40-rpts                                                                                      

Query      721 LKSLSPPAPDENLEKPPLFQQGSPVVGAMAMALRERWRSDTGKCVDASPLLVRAAVQDKPSTTVYIGSHSHTVKAVDLSS 800 
WD40-rpts                                                                          (___________

Query      801 GETRWEQLLGDRIESSACVSKCGNFIVVGCYNGLVYVLKSNSGEKYWTFTTEDAVKSSPAVDPTTGLIYVGSHDQHAYAL 880 
WD40-rpts      ____________WD 1______________________)                                         

Query      881 DIYEKKCVWKLNCEGALFSSPCVSLSPHHLYCATLGGLLLALNPASGSTVWKRSCGKPLFSSPRCYQQYICIGCVDGSLL 960 
WD40-rpts                                                                                      

Query      961 CFTHSGEQVWRFAAGGPIFSSPCVSAAEQEIFFGSHDCFIYCCSKEGHLRWKFETTARVYATPFAFSNHPRSDDALLAAA 1040
WD40-rpts                                                  (____________________WD 2___________

Query     1041 STDGKLWVLESRSGELRSVYELPGEVFSSPVVWESMLVIGCRNNYIYCLDLLCGDKNNQV 1100
WD40-rpts      _________)                                                  

2 WD40-repeats found in QUERY=ENSMUSP00000113792 (Len=1100):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 27   789-839      2.84  231.86  0.04573       17.5%     40.20
  WD 2:  Seg 44  1005-1050     2.77  229.00  0.04986       27.5%     44.86

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  789-839    HSHTVKAVDLSSGETRWEQLLGDRIESSACVS------KCGNFIVVGCYNGLVYVLK
   WD 2 1005-1050   KEGHLRWKFETTARVY-----------ATPFAFSNHPRSDDALLAAASTDGKLWVLE

   WD40 Template    TGECLRTLSGHTSGVT-----------SVSFS------PDGKRLVSGSEDGTIKVWD