WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000113705 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000113705 (Len=3054) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000113705, Len=3054): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MHLHQVLTGAVNPGDNCYSVGSVGDVPFTAYGSGCDIVILASDFECVQIIPGAKHGNIQVSCVECSNQHGRVAASYGNAV 80
WD40-rpts (___________________WD 1______________
Query 81 CIFEPLGVNSHKRNSQLKCQWLKTGQFFLSSVTYNLAWDPQDNRLLTATDSIQLWAPPGGDILEEEEDVDNRAPPVLNDW 160
WD40-rpts ____)
Query 161 KCIWQCKTSVSVHLMEWSPDGEYFATAGKDDCLLKVWYPMTGWKSSIIPQDPHEVKRRRASTQFSFVYLAHPRAVTGFSW 240
WD40-rpts (_____________WD 2_____________)
Query 241 RKTSKYMPRGSVCNVLLTSCHDGVCRLWAETLLPEDCLLGEQICETTTSSVASNLSSAGKHKDRIQHALETIHHLKNLRK 320
WD40-rpts
Query 321 GQRRSSVLVTHAELMPDKTATHEVHRHISHHANALCHFHIAASINPTTDIPNVLVGTAFNIDDINGGFVVHWLNNKEFHF 400
WD40-rpts
Query 401 TSSTEIFMHQLRKLSEKQLDHESDDADREDEERSQDERERGLRMKLDHELSLDRESEAGTGSSEHEDGEREGSPRTHPRP 480
WD40-rpts
Query 481 SISMPLPTVLLDRKIETLLTEWNKNPDMLFTIHPVDGTFLVWHVKYLDEYNPGIFRQVQVSFSSRIPVAFPSGDANSLSK 560
WD40-rpts
Query 561 NIMMYACVNATKDSYNPSQQEMMSVDSPHGSQLHSPSHSTDMNILAPTVMMVSKHIDGSLNQWAVTFADKSAFTTVLTVS 640
WD40-rpts
Query 641 HKFRYCGHRFHLNDLACHSVLPLLLTSSHHNALLTPESDCQWDSDSKVNRLIDPVKHTKASSKQPLRNAATRTFHDPNAI 720
WD40-rpts
Query 721 YSELILWRVDPIGPLSYTGGVSELARINSLHTSAFSNVAWLPTLIPSYCLGTYCNSASACFVASDGKNLRLYQAVVDARK 800
WD40-rpts
Query 801 LLDELSDPEASKLIGEVFNIVSQQSTARPGCIIELDAITDQCGSNTQLLHVFQEDFIIGYKPHKEDMEKKEKESEIFFQP 880
WD40-rpts
Query 881 SQGYRPPPFSEKFFLVVIEKDGNNNSILHMWHLHLKSVQACLAKAAEGISSDSLLSVPGQKNLDSSPETSSSMSSVPHSS 960
WD40-rpts
Query 961 SIANLQTASKLILSSRLVYSQPLDLPEAVEVIRATPSAGHLSSSSIYPVCLAPYLVVTTCSDNKVRFWKCCMETNSLGNT 1040
WD40-rpts (_______________WD 3_______________)
Query 1041 SDESETYHWRRWPLMNDEGEDNSSTVSIVGRPVAVSCSYTGRLAVAYKQPIHHNGFISKEFSMHVCIFECESTGGSEWVL 1120
WD40-rpts
Query 1121 EQTIHLDDLVKVGSVLDSRVSVDSNLFVYSKSDAFLSKDRYLIPNIKHLVHLDWVSKEDGSHILTVGVGANIFMYGRLSG 1200
WD40-rpts
Query 1201 IVSDQTNSKDGVAVITLPLGGSIKQGVKSRWVLLRSIDLVSSVDGTPSLPVSLSWVRDGILVVGMDCEMHVYAQWKHSVK 1280
WD40-rpts
Query 1281 FGNVDADSPVEETIQDHSALKSSMLARKSIVEGAAIPDDVFCSPTVVQDGGLFEAAHALSPTLPQYHPTQLLELMDLGKV 1360
WD40-rpts
Query 1361 RRAKAILSHLVKCIAGEVAIVRDPDAGEGTKRHLSRTISVSGSTAKDTVTIGKDGTRDYTEIDSIPPLPLHALLAADQDT 1440
WD40-rpts
Query 1441 SYRISEDSTKKPQSYEDHIESQSEDQYSELFQVQEITTDDIDLEPEKRENKSKVINLSQYGPACFGQEHARVLSSHLMHS 1520
WD40-rpts
Query 1521 SLPGLTRLEQMFLVALADTVATTSTELDENRDKNYSGRDTLDECGLRYLLAMRLHTCLLTSLPPLYRVQLLHQGVSTCHF 1600
WD40-rpts
Query 1601 AWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRNVNTLRRCIEKVAKAAFQRNNEALDAALFYLSMKKKAVVWG 1680
WD40-rpts
Query 1681 LFRSQHDEKMTTFFSHNFNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLFESE 1760
WD40-rpts
Query 1761 FETSSTYISILNQKILGCQKDGTGFDCKRLHPDPFLRSLAYWVVKDYTRALDTLLEQTPKEDDEQQVIIKSCNPVVFSFY 1840
WD40-rpts
Query 1841 NYLRTHPLLIRRNLASPEGTLATLGLKTEKNIADKINLIERKLFFTTANAHFKVGCPVLALEVLSKIPKVTKISSLTAKK 1920
WD40-rpts
Query 1921 DQLDSVSGRMENGPSESKPVSRSDGGSGADWSAVTSSQFDWSQPMVTVDEEPLRLDWGDDHDGALEEDDGGGLVMKTTDA 2000
WD40-rpts
Query 2001 KKAGQEQSASDPRALLTPQDEECADGDTEVDVIAEQLKFRACLKILMTELRTLATGYEVDGGKLRFQLYNWLEKEIAALH 2080
WD40-rpts
Query 2081 EICNHESVIKEYSSKAHSTVETERLDQEEMVDKPDIGSYERHQIERRRLQAKREHAERRKLWLQKNQDLLRVFLSYCSLH 2160
WD40-rpts
Query 2161 GAQGGGLASVRMELKFLLQESQQETTVKQLQSPLPLPTTLPLLSASIASTKTVIANPVLYLNNHIHDILYTIVQMKTPPH 2240
WD40-rpts
Query 2241 PSVEDVKVHTLHSLAASLSASIYQALCDSHSYSSQSEGNQFTGMAYQGLLLSDRRRLRTESIEEHATPNSAPAQWPGVSS 2320
WD40-rpts
Query 2321 LINLLSSAQDEDQPKLNVLLCEAVVAVYLSLLIHALATNSSNELFRLAAHPLNNRMWAAVFGGGVKLVVKPRRQSESIAA 2400
WD40-rpts
Query 2401 PPVASEDMDKHRRRFNMRMLVPGRPVKDATPPPVPAERPSYKEKFIPPELSMWDYFVAKPFLPLSDSGVIYDSDESVHSD 2480
WD40-rpts
Query 2481 DEEDDAFFSDTQIQEHQDPNSYSWALLHLTMVKLALHNIKNFFPIAGLEFSELPVTSPLGIAVIKNLENWEQILQEKMDH 2560
WD40-rpts
Query 2561 FEGPPPNYVNTYPTDLSVGAGPAILRNKAMLEPENTPFKSRDSSALPVKRLWHFLVKQEVLQETFIRYIFTKKRKQSESV 2640
WD40-rpts
Query 2641 EEHVEQVKHNSVAEDCHIKVEADLGYPGGKAKVIHKESDMIMAFSINKANCNEIVLASTHDVQELDVTSLLACQSYIWIG 2720
WD40-rpts
Query 2721 EEYDRESKSSDDIDYRGSTTTLYQPGAASHSSSQPHPPPSLPWLGSGQTSTGATVLMKRNLHNVKRMTSHPVHQYYLTGA 2800
WD40-rpts (______________WD 4_____
Query 2801 QDGSVRMFEWTRPQQLVCFRQAGNARVTRLYFNSQGNKCGVADGEGFLSIWQVNQTASNPKPYMSWQCHSKATSDFAFIT 2880
WD40-rpts ________)(___________________WD 5__________________) (_______________
Query 2881 SSSLVATSGHSNDNRNVCLWDTLISPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGYICIFDIRQRQLIHTFQAHD 2960
WD40-rpts _WD 6_______________) (_______________WD 7_______________) (__________
Query 2961 SAIKALALDSCEEYFTTGSAEGNIKVWRLTGHGLIHSFKSEHAKQSIFRNIGAGVMQIAISQDNRLFSCGADGTLKTRVL 3040
WD40-rpts _______WD 8________________)
Query 3041 PSAFNIPNRILDIL 3054
WD40-rpts
 8 WD40-repeats found in QUERY=ENSMUSP00000113705 (Len=3054): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 5 43-85 3.20 246.72 0.02908 20.0% 53.51 WD 2: Seg 14 167-198 3.72 268.41 0.01494 25.0% 28.79 WD 3: Seg 41 994-1029 3.10 242.69 0.03289 15.0% 20.86 WD 4: Seg 73 2777-2809 4.53 301.87 0.00531 12.5% 45.29 WD 5: Seg 76 2810-2852 5.00 321.08 0.00293 15.0% 56.59 WD 6: Seg 80 2865-2901 3.58 262.34 0.01801 12.5% 39.71 WD 7: Seg 83 2911-2946 6.03 363.89 0.00078 25.0% 48.38 WD 8: Seg 86 2950-2988 7.32 417.13 0.00015 25.0% 50.88Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 43-85 DF---ECVQIIPGAKHGNIQVSCVECSNQHGRVAA-S---YGNAVCIFEP WD 2 167-198 ------------KTSVS---VHLMEWSPDGEYFATAG---KDDCLLKVWY WD 3 994-1029 -------ATPSAGHLSS---SSIYPVCLAPYLVVT-T---CSDNKVRFWK WD 4 2777-2809 ----------MKRNLHN---VKRMTSHPVHQYYLT-G---AQDGSVRMFE WD 5 2810-2852 WTRPQQLVCFRQAGNAR---VTRLYFNSQGNKCGV-A---DGEGFLSIWQ WD 6 2865-2901 SW---QC------HSKA---TSDFAFITSSSLVAT-SGHSNDNRNVCLWD WD 7 2911-2946 -------IHGFTCHDHG---ATVLQYAPKQQLLIS-G---GRKGYICIFD WD 8 2950-2988 -R---QLIHTFQAHDSA---IKALALDSCEEYFTT-G---SAEGNIKVWR WD40 Template TG---ECLRTLSGHTSG---VTSVSFSPDGKRLVS-G---SEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |