WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000113693 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000113693 (Len=3032) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000113693, Len=3032): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MHLHQVLTGAVNPGDNCYSVGSVGDVPFTAYGSGCDIVILASDFECVQIIPGAKHGNIQVSCVECSNQHGRVAASYGNAV 80
WD40-rpts (___________________WD 1______________
Query 81 CIFEPLGVNSHKRNSQLKCQWLKTGQFFLSSVTYNLAWDPQDNRLLTATDSIQLWAPPGGDILEEEEDVDNRAPPVLNDW 160
WD40-rpts ____)
Query 161 KCIWQCKTSVSVHLMEWSPDGEYFATAGKDDCLLKVWYPMTGWKSSIIPQDPHEVKRRRASTQFSFVYLAHPRAVTGFSW 240
WD40-rpts (_____________WD 2_____________)
Query 241 RKTSKYMPRGSVCNVLLTSCHDGVCRLWAETLLPEDCLLGEQICETTTSSVASNLSSAGKHKDRIQHALETIHHLKNLRK 320
WD40-rpts
Query 321 GQRRSSVLVTHAELMPDKTATHEVHRHISHHANALCHFHIAASINPTTDIPNVLVGTAFNIDDINGGFVVHWLNNKEFHF 400
WD40-rpts
Query 401 TSSTEIFMHQLRKLSEKQLDHESDDADREDEERSQDERERGLRMKLDHELSLDRESEAGTGSSEHEDGEREGSPRTHPRP 480
WD40-rpts
Query 481 SISMPLPTVLLDRKIETLLTEWNKNPDMLFTIHPVDGTFLVWHVKYLDEYNPGIFRQVQVSFSSRIPVAFPSGDANSLSK 560
WD40-rpts
Query 561 NIMMYACVNATKDSYNPSQQEMMSVDSPHGSQLHSPSHSTDMNILAPTVMMVSKHIDGSLNQWAVTFADKSAFTTVLTVS 640
WD40-rpts
Query 641 HKFRYCGHRFHLNDLACHSVLPLLLTSSHHNALLTPESDCQWDSDSKVNRLIDPVKHTKASSKQPLRNAATRTFHDPNAI 720
WD40-rpts
Query 721 YSELILWRVDPIGPLSYTGGVSELARINSLHTSAFSNVAWLPTLIPSYCLGTYCNSASACFVASDGKNLRLYQAVVDARK 800
WD40-rpts
Query 801 LLDELSDPEASKLIGEVFNIVSQQSTARPGCIIELDAITDQCGSNTQLLHVFQEDFIIGYKPHKEDMEKKEKESEIFFQP 880
WD40-rpts
Query 881 SQGYRPPPFSEKFFLVVIEKDGNNNSILHMWHLHLKSVQACLAKAAEGISSDSLLSVPGQKNLDSSPETSSSMSSVPHSS 960
WD40-rpts
Query 961 SIANLQTASKLILSSRLVYSQPLDLPEAVEVIRATPSAGHLSSSSIYPVCLAPYLVVTTCSDNKVRFWKCCMETNSLGNT 1040
WD40-rpts (_______________WD 3_______________)
Query 1041 SDESETYHWRRWPLMNDEGEDNSSTVSIVGRPVAVSCSYTGRLAVAYKQPIHHNGFISKEFSMHVCIFECESTGGSEWVL 1120
WD40-rpts
Query 1121 EQTIHLDDLVKVGSVLDSRVSVDSNLFVYSKSDAFLSKDRYLIPNIKHLVHLDWVSKEDGSHILTVGVGANIFMYGRLSG 1200
WD40-rpts
Query 1201 IVSDQTNSKDGVAVITLPLGGSIKQGVKSRWVLLRSIDLVSSVDGTPSLPVSLSWVRDGILVVGMDCEMHVYAQWKHSVK 1280
WD40-rpts
Query 1281 FGNVDADSPVEETIQDHSALKSSMLARKSIVEGAAIPDDVFCSPTVVQDGGLFEAAHALSPTLPQYHPTQLLELMDLGKV 1360
WD40-rpts
Query 1361 RRAKAILSHLVKCIAGEVAIVRDPDAGEGTKRHLSRTISVSGSTAKDTVTIGKDGTRDYTEIDSIPPLPLHALLAADQDT 1440
WD40-rpts
Query 1441 SYRISEDSTKKPQSYEDHIESQSEDQYSELFQVQEITTDDIDLEPEKRENKSKVINLSQYGPACFGQEHARVLSSHLMHS 1520
WD40-rpts
Query 1521 SLPGLTRLEQMFLVALADTVATTSTELDENRDKNYSGRDTLDECGLRYLLAMRLHTCLLTSLPPLYRVQLLHQGVSTCHF 1600
WD40-rpts
Query 1601 AWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRNVNTLRRCIEKVAKAAFQRNNEALDAALFYLSMKKKAVVWG 1680
WD40-rpts
Query 1681 LFRSQHDEKMTTFFSHNFNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLFESE 1760
WD40-rpts
Query 1761 FETSSTYISILNQKILGCQKDGTGFDCKRLHPDPFLRSLAYWVVKDYTRALDTLLEQTPKEDDEQQVIIKSCNPVVFSFY 1840
WD40-rpts
Query 1841 NYLRTHPLLIRRNLASPEGTLATLGLKTEKNIADKINLIERKLFFTTANAHFKVGCPVLALEVLSKIPKVTKISSLTAKK 1920
WD40-rpts
Query 1921 DQLDSVSGRMENGPSESKPVSRSDGGSGADWSAVTSSQFDWSQPMVTVDEEPLRLDWGDDHDGALEEDDGGGLVMKTTDA 2000
WD40-rpts
Query 2001 KKAGQEQSASDPRALLTPQDEECADGDTEVDVIAEQLKFRACLKILMTELRTLATGYEVDGGKLRFQLYNWLEKEIAALH 2080
WD40-rpts
Query 2081 EICNHESVIKEYSSKAHSTVETERLDQEEMVDKPDIGSYERHQIERRRLQAKREHAERRKLWLQKNQDLLRVFLSYCSLH 2160
WD40-rpts
Query 2161 GAQGGGLASVRMELKFLLQESQQETTVKQLQSPLPLPTTLPLLSASIASTKTVIANPVLYLNNHIHDILYTIVQMKTPPH 2240
WD40-rpts
Query 2241 PSVEDVKVHTLHSLAASLSASIYQALCDSHSYSQSEGNQFTGMAYQGLLLSDRRRLRTESIEEHATPNSAPAQWPGVSSL 2320
WD40-rpts
Query 2321 INLLSSAQDEDQPKLNVLLCEAVVAVYLSLLIHALATNSSNELFRLAAHPLNNRMWAAVFGGGVKLVVKPRRQSESIAAP 2400
WD40-rpts
Query 2401 PVASEDMDKHRRRFNMRMLVPGRPVKDATPPPVPAERPSYKEKFIPPELSMWDYFVAKPFLPLSDSGVIYDSDESVHSDD 2480
WD40-rpts
Query 2481 EEDDAFFSDTQIQEHQDPNSYSWALLHLTMVKLALHNIKNFFPIAGLEFSELPVTSPLGIAVIKNLENWEQILQEKMDHF 2560
WD40-rpts
Query 2561 EGPPPNYVNTYPTDLSVGAGPAILRNKAMLEPENTPFKSRDSSALPVKRLWHFLVKQEVLQETFIRYIFTKKRKQSEVEA 2640
WD40-rpts
Query 2641 DLGYPGGKAKVIHKESDMIMAFSINKANCNEIVLASTHDVQELDVTSLLACQSYIWIGEEYDRESKSSDDIDYRGSTTTL 2720
WD40-rpts
Query 2721 YQPGAASHSSSQPHPPPSLPWLGSGQTSTGATVLMKRNLHNVKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQA 2800
WD40-rpts (______________WD 4_____________)(____________
Query 2801 GNARVTRLYFNSQGNKCGVADGEGFLSIWQVNQTASNPKPYMSWQCHSKATSDFAFITSSSLVATSGHSNDNRNVCLWDT 2880
WD40-rpts _______WD 5__________________)(______________________WD 6_____________________)
Query 2881 LISPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGYICIFDIRQRQLIHTFQAHDSAIKALALDSCEEYFTTGSAEG 2960
WD40-rpts (_______________WD 7_______________) (_________________WD 8___________
Query 2961 NIKVWRLTGHGLIHSFKSEHAKQSIFRNIGAGVMQIAISQDNRLFSCGADGTLKTRVLPSAFNIPNRILDIL 3032
WD40-rpts _____)
 8 WD40-repeats found in QUERY=ENSMUSP00000113693 (Len=3032): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 5 43-85 3.09 242.50 0.03308 20.0% 52.14 WD 2: Seg 14 167-198 3.65 265.50 0.01633 25.0% 28.79 WD 3: Seg 42 994-1029 3.10 242.72 0.03286 15.0% 20.86 WD 4: Seg 74 2755-2787 4.37 295.33 0.00650 12.5% 45.72 WD 5: Seg 77 2788-2830 4.83 314.09 0.00364 15.0% 56.15 WD 6: Seg 81 2831-2879 3.73 268.66 0.01482 10.0% 43.27 WD 7: Seg 84 2889-2924 5.96 360.94 0.00085 25.0% 48.50 WD 8: Seg 87 2928-2966 7.25 414.19 0.00016 25.0% 50.83Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 43-85 DF------ECVQIIPGAKHGNIQVSCVECSNQHGRVAA-S---YGNAVCIFEP WD 2 167-198 ---------------KTSVS---VHLMEWSPDGEYFATAG---KDDCLLKVWY WD 3 994-1029 ----------ATPSAGHLSS---SSIYPVCLAPYLVVT-T---CSDNKVRFWK WD 4 2755-2787 -------------MKRNLHN---VKRMTSHPVHQYYLT-G---AQDGSVRMFE WD 5 2788-2830 WT---RPQQLVCFRQAGNAR---VTRLYFNSQGNKCGV-A---DGEGFLSIWQ WD 6 2831-2879 VNQTASNPKPYMSWQCHSKA---TSDFAFITSSSLVAT-SGHSNDNRNVCLWD WD 7 2889-2924 ----------IHGFTCHDHG---ATVLQYAPKQQLLIS-G---GRKGYICIFD WD 8 2928-2966 -R------QLIHTFQAHDSA---IKALALDSCEEYFTT-G---SAEGNIKVWR WD40 Template TG------ECLRTLSGHTSG---VTSVSFSPDGKRLVS-G---SEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |