Input parameters:

  Query = ENSMUSP00000113620 (Len=509)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000113620, Len=509):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGSRNSSSAGSGSLEPSEGLSRRGTGLRRSEEEEEEDEDVDLAQVLAYLLRRPSRTQRKSMTVPGMVALEIDITHPWMRP 80  
WD40-rpts                                                                     (________________

Query       81 PTPGSWNTMRSRHRWDWPRGGWDFGGLRCSRVFRRCYTSFLPNDLSFTDTYSQKAFCGIYSKDGQIFMSACQDQTIRLYD 160 
WD40-rpts      _WD 1_________________)                  (_________________WD 2________________)

Query      161 CRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEGDTHTALDLRPDERRFAVFSIAVSSDGREV 240 
WD40-rpts           (__________________WD 3_________________)          (________________WD 4___

Query      241 LGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITF 320 
WD40-rpts      ____________)   (_________________WD 5_________________)        (_______________

Query      321 IDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVPKIAWKKLKLPGDSSLMTYRGHGVLHTL 400 
WD40-rpts      __WD 6________________)   (_________________WD 7________________)_______________

Query      401 IRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYRQAEYFQD 480 
WD40-rpts      _____WD 8___________________)   (_________________WD 9________________)         

Query      481 DMPESDMNRVCSSGPTPVPCPSVAFSSPQ 509 
WD40-rpts                                   

9 WD40-repeats found in QUERY=ENSMUSP00000113620 (Len=509):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    64-103      6.42  379.85  0.00047       10.0%      2.36
  WD 2:  Seg  5   122-160      8.51  466.28  3.2e-05       22.5%     47.62
  WD 3:  Seg  8   166-206      6.99  403.22  0.00023       22.5%     54.52
  WD 4:  Seg 13   217-253      8.28  456.68  4.4e-05       25.0%     40.34
  WD 5:  Seg 16   257-296      8.31  458.10  4.2e-05       30.0%     57.87
  WD 6:  Seg 20   305-343      9.58  510.46  8.2e-06       37.5%     52.22
  WD 7:  Seg 24   347-385      4.34  293.93  0.00679        5.0%     14.81
  WD 8:  Seg 25   385-429      6.98  402.92  0.00023       27.5%     50.51
  WD 9:  Seg 29   433-471      9.85  521.35  5.8e-06       32.5%     54.46

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   64-103    PGMVALEIDITH------PW--MRPPTPGS-WNTMRSRHRWDWPRGGWD
   WD 2  122-160    -PNDLSFTDTYS------QK--AFCGIYSK-DGQIFMSACQDQTIRLYD
   WD 3  166-206    -FHKFKSIKARD------VGWSVLDVAFTP-DGNHFLYSSWSDYIHICN
   WD 4  217-253    ---LDLRPDERR------FA--VFSIAVSS-DGREVLGGANDGCLYVFD
   WD 5  257-296    -NRRTLQIESHE------DD--VNAVAFADISSQILFSGGDDAICKVWD
   WD 6  305-343    -PKPVGALAGHQ------DG--ITFIDSKG-DARYLISNSKDQTIKLWD
   WD 7  347-385    -FSSREGMEASR------LA--ATQQNWDY-RWQQVPKIAWKKLKLPGD
   WD 8  385-429    -DSSLMTYRGHGVLHTLIRC--RFSPAHST-GQQFIYSGCSTGKVVVYD
   WD 9  433-471    -GHIVKKLTNHK------AC--VRDVSWHP-FEEKIVSSSWDGNLRLWQ

   WD40 Template    TGECLRTLSGHT------SG--VTSVSFSP-DGKRLVSGSEDGTIKVWD