Input parameters:

  Query = ENSMUSP00000113320 (Len=602)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000113320, Len=602):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGPGAPCDPCAPAAVWKRHIVRQLRHRDRTQKALFLELVPAYNHLLEKAELLAKFSEKLKSEPKDAISTRHEDWREEVS 80  
WD40-rpts                                                                                      

Query       81 GTGPDQVSSPASLRVKWQQEKKGLQLVCGEMAYQVVKKSAALDTLQSQLEERQDRLEALQACVVQLQEARAQQSRQLEER 160 
WD40-rpts                                                                                      

Query      161 QAENAAQREAYETLLQQAVHQEAALRRLQEEARDLLEQLVQRKARAAAERNLRNERRERANQALVSQELKKAAKRTVSIS 240 
WD40-rpts                                                                           (__________

Query      241 EIPNTLEDGTKEETVALAPAALPEFSESETCEKWKRPFSFKKRRGHSVGGAPEQRYQSIPVCVSAQIPSQAQDVLDAHLS 320 
WD40-rpts      __WD 1____________)  (_________________WD 2________________)        (___________

Query      321 EVNAVCFGPNSSLLATGGADRLIHLWNVVGGRLEANQTLEGAGGSITSVDFDPSGSQVLAATYNQAAQLWKVGETQSKET 400 
WD40-rpts      ______WD 3________________)(___________________WD 4___________________)   (_____

Query      401 LSGHKDKVTAAKFKLTRHQAVTGSRDRTVKEWDLGRAYCSRTINVLSYCNDVVCGDHIIISGHNDQKIRFWDSRGPHCIQ 480 
WD40-rpts      ____________WD 5________________)   (_______________WD 6_______________)  (_____

Query      481 VIPVQGRVTSLHLSYDQLHLLSCSRDNTLKVIDLRISNIRQVFRADGFKCSSDWTKAVFSPDRSYALAGSSNGDLYIWDV 560 
WD40-rpts      ____________WD 7________________)   (___________________WD 8__________________) 

Query      561 NTGKLETSLQGPHCTAVNAVAWCFSGNHVVSVDQGRKVVLWH 602 
WD40-rpts        (_________________WD 9_________________)

9 WD40-repeats found in QUERY=ENSMUSP00000113320 (Len=602):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   230-259      4.69  308.37  0.00434       15.0%     24.23
  WD 2:  Seg  2   262-300      4.35  294.37  0.00670       10.0%     24.88
  WD 3:  Seg  4   309-347      9.17  493.38  1.4e-05       30.0%     46.46
  WD 4:  Seg  7   348-391      9.13  491.94  1.5e-05       27.5%     54.03
  WD 5:  Seg 11   395-433     10.13  533.20  4.0e-06       40.0%     54.72
  WD 6:  Seg 15   437-472      6.59  386.73  0.00038       22.5%     46.63
  WD 7:  Seg 19   475-513      7.99  444.89  6.3e-05       35.0%     54.13
  WD 8:  Seg 23   517-559      7.85  438.97  7.5e-05       27.5%     53.63
  WD 9:  Seg 27   563-602      7.76  435.30  8.5e-05       25.0%     50.69

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  230-259    ---------------K----KAAKRTVSISEIPNTLEDGTKEETVALAP
   WD 2  262-300    -L----PEFSESET-C----EKWKRPFSFKKRRGHSVGGAPEQRYQSIP
   WD 3  309-347    -S----QAQDVLDA-H----LSEVNAVCFGPNSSLLATGGADRLIHLWN
   WD 4  348-391    VVGGRLEANQTLEG-A----GGSITSVDFDPSGSQVLAATYNQAAQLWK
   WD 5  395-433    -T----QSKETLSG-H----KDKVTAAKFKLTRHQAVTGSRDRTVKEWD
   WD 6  437-472    -A----YCSRTINV-L----SY---CNDVVCGDHIIISGHNDQKIRFWD
   WD 7  475-513    -G----PHCIQVIP-V----QGRVTSLHLSYDQLHLLSCSRDNTLKVID
   WD 8  517-559    -S----NIRQVFRA-DGFKCSSDWTKAVFSPDRSYALAGSSNGDLYIWD
   WD 9  563-602    -G----KLETSLQGPH----CTAVNAVAWCFSGNHVVSVDQGRKVVLWH

   WD40 Template    TG----ECLRTLSG-H----TSGVTSVSFSPDGKRLVSGSEDGTIKVWD