Input parameters:

  Query = ENSMUSP00000113309 (Len=1299)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000113309, Len=1299):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDTEENPLEESRESGEMEEEKEEKKEEEEEEEEGEKEKEEEEEEEKGKEEEKEEEKEEGKEEEKKEEEEEKGKKEEEEE 80  
WD40-rpts                                                                                      

Query       81 EEEEGKGKEEEKEEEKEEEEKEEEKEKEEEEEEEGKGKEEEEEGKEEEEEEKEEEEKEEEKEEEEEEEEEKEEYNPSFEE 160 
WD40-rpts                                                                                      

Query      161 DALQQSLTEGSLSWEESQEDGEGLEEWVEKEEQREGEEVRGEEESEVRGREEEEGWEEEKSGEEEKSEESERSKERGGEE 240 
WD40-rpts                                                                                      

Query      241 EGQEKEEAEHEGEREEGREEEEKEKSVEREEEEEEEDTETTETKAGRAKEEKKEKQNKTALVDNIVISHEPPRSSSSLAD 320 
WD40-rpts                                                                                      

Query      321 SPEVSQIYKDNSMKVDDTEEASQKPEDILAQGKDEARLSLEERRKLFQSKGLSAEESLVSVSTEDTLFQKEEDSKVYPLS 400 
WD40-rpts                                                                                      

Query      401 MTWSFGWNSSLPVYYMREDRRVILYTCAHTAIMYDVVRNTQYHLQGHPNIISCLCVSEDRRWIATADEGPDCLIIIWDSF 480 
WD40-rpts                                           (__________________WD 1_________________)  

Query      481 TGIPVHTIFDSCPEGNGMRSIAITRDSKFLATISDSATQKVCIWKWTLAVETPACTLELPKEYGFQDNLVFNPANNKELV 560 
WD40-rpts          (__________________WD 2_________________)       (_________________WD 3______

Query      561 SNSKTQAIYYCWFEDKGILAHSAPVLTEKTFNKLVGKFSQSVFHLKLPQVLSATKEGKLVVWDIHYPSSTSSSAISAFPF 640 
WD40-rpts      __________)          (__________________WD 4__________________)(________________

Query      641 IKPRKLVHLQKEAITVLMTIDSYIVTGDIKGNIKFYDHTLSVVNWYSNFKLGAIRTLSFSKTIPSLPTEKSNLPTDCTLR 720 
WD40-rpts      ________WD 5________________________)                                           

Query      721 GDLFVVRNFIIGTFDATVYHMTVDGTKLEKLFVEPRDAVYAVSCHPYQPLIAVGSVCGMIKVWDFEKKVYLFSRTFEKGL 800 
WD40-rpts                             (__________________WD 6_________________)(_______________

Query      801 GVQCLTYNPEGALLGAGFTEGTVYILDAMSLENESPEPFKYSKSSVSHCCFSHDSNYMATADVNFTVAVYMVVVKNGQRV 880 
WD40-rpts      ____WD 7__________________)     (_________________WD 8________________)    (____

Query      881 WEYLARLRSHQNSIQSLLFGVHLDSNEPRLLSLGKDRFLIEYNLVKSCKDHLDVLDVHRTDQGNYPTCMIWYPPLTKELF 960 
WD40-rpts      _________________WD 9_____________________)                                     

Query      961 LLICNSGYKVKLFNATTKMCRKTLLGPAYGSPIEHAQVLPVKSTLELQKRYLVFINKDKVGLQILPVDGNPHKTCAIVCH 1040
WD40-rpts                                                                       (______________

Query     1041 PNGVAGMALSYDGRFAFTAGGQDRSVVQWKINLGALEAAVSLGGEDLTPFYGLVSGGREGKFYRELEDYFYYSQIRSQGI 1120
WD40-rpts      ______WD10___________________)                                                  

Query     1121 DTMETRQVSEHICLSELPFVMRAIGFYPSEEKIEDMFNEIKFSEYVETGKLIDKINLPDFLKVYLNHRPPFGNTMDGIQN 1200
WD40-rpts                                                                                      

Query     1201 SFNVLGYTNSEGKKAIRREDFLNLLLTKGEHMTEEEMIDCFSTLFGLTPEGWKSEPAATCINGPEICLQKELPEEITAEI 1280
WD40-rpts                                                                                      

Query     1281 FTTEILGLTLSDSSEQLIQ 1299
WD40-rpts                         

10 WD40-repeats found in QUERY=ENSMUSP00000113309 (Len=1299):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   438-478      5.75  352.14  0.00112       25.0%     52.21
  WD 2:  Seg  9   485-525      4.33  293.70  0.00684       17.5%     42.21
  WD 3:  Seg 13   533-571      2.81  230.88  0.04711       10.0%     41.89
  WD 4:  Seg 17   582-623      5.19  329.25  0.00227       20.0%     41.04
  WD 5:  Seg 20   624-677      3.34  252.82  0.02412       17.5%     42.70
  WD 6:  Seg 29   744-784      7.12  408.91  0.00019       32.5%     52.93
  WD 7:  Seg 33   785-827      5.44  339.18  0.00167       25.0%     52.77
  WD 8:  Seg 37   833-871      5.55  343.87  0.00144       20.0%     39.78
  WD 9:  Seg 40   876-923      4.60  304.78  0.00485       27.5%     39.97
  WD10:  Seg 51  1026-1070     5.38  336.80  0.00180       22.5%     43.37

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  438-478    -R----------------N----TQ--YHLQ---GHPNIISCLCVSEDRR----WIAT-ADEGPDCLIIIWD
   WD 2  485-525    -V----------------H----TI--FDSC---PEGNGMRSIAITRDSK----FLAT-ISDSATQKVCIWK
   WD 3  533-571    -P----------------A----CT--LELP---KEYGFQDNLVFNPANN----KELV-SNS--KTQAIYYC
   WD 4  582-623    SA----------------P----VLTEKTFN---KLVGKFSQSVFHLKLP----QVLS-ATK--EGKLVVWD
   WD 5  624-677    IHYPSSTSSSAISAFPFIK----PR--KLVH---LQKEAITVLMTI--DS----YIVT-GDI--KGNIKFYD
   WD 6  744-784    DG---------------TK----LE--KLFV---EPRDAVYAVSCHPYQP----LIAV-GSV--CGMIKVWD
   WD 7  785-827    FE----------------K----KV--YLFSRTFEKGLGVQCLTYNPEGA----LLGA-GFT--EGTVYILD
   WD 8  833-871    -N----------------E----SP--EPFK---YSKSSVSHCCFSHDSN----YMAT-ADV--NFTVAVYM
   WD 9  876-923    NG------------QRVWE----YL--ARLR---SHQNSIQSLLFGVHLDSNEPRLLS-LGK--DRFLIEYN
   WD10 1026-1070   PV----------------DGNPHKT--CAIV---CHPNGVAGMALSYDGR----FAFTAGGQ--DRSVVQWK

   WD40 Template    TG----------------E----CL--RTLS---GHTSGVTSVSFSPDGK----RLVS-GSE--DGTIKVWD