Input parameters:

  Query = ENSMUSP00000113092 (Len=784)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000113092, Len=784):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYQLQGCVNILFLASVGELLRTWKKMPRVEDMPSITLHSVMASPNAEYVRWKVHGDFVSQLNYYESMKAVISSSNHEPTA 80  
WD40-rpts                                                (__________________WD 1_______________

Query       81 LVIGSLLNRLEHGGFTVGATDIKEKLNEIRNVGKNVKMGNSSACLALPQRQAECNRTVFRVHKGVKAFSFCRRKNLLVTG 160 
WD40-rpts      __)(____________________WD 2____________________)  (_________________WD 3_______

Query      161 GLDRIIRVWNPYLPGKPTGVLRGHRAPVMYVHVAFEENKVFSMSADNTVKVWDLETHGCCCTISSKASGIKGELTACLYL 240 
WD40-rpts      _________)    (_________________WD 4________________)   (___________________WD 5

Query      241 PGPRALCVATGTLAFLHLKVGSVPESHLVRSHQEPVVCCRYNPAFRHVVSCCEASVVKVWDFETGRQVSEFIGTHGNAGI 320 
WD40-rpts      __________________)   (_________________WD 6________________)   (_______________

Query      321 TCLTFDSSGRRLVTGGRDGCLKIWSYNNGHCLHTLQHDENQSEVCDCTYMEVNRNRCVIAVGWDRRINVYFDIPRDFHHF 400 
WD40-rpts      ___WD 7_________________)   (___________________WD 8__________________)     (___

Query      401 RKPQPHWQDDLNHGHKEDILCVAQCPPFLLATSSYDGEIIVWNVISGHMYCKLNTPSPMDGQDHREGPDRSVSQLAFLKT 480 
WD40-rpts      __________________WD 9____________________)          (_______________________WD1

Query      481 RLTKLDSASAALISNGPGGSVCFWKLFSGSGLVANFTPSREKAQVSGIVVTSGDTLAYLADQHGFIHVYDIQEYGLQGTE 560 
WD40-rpts      0_______________________)(____________________WD11___________________)          

Query      561 LQAPNTVTSWRAHVSMVTSLELIEGGSIVLSSSLDCTVRLWSQDGAYIGTFGQNHPWDVFTPDSWGHPRVPFEILTDPRS 640 
WD40-rpts         (_________________WD12________________)(________________WD13________________)

Query      641 MPTHRVLETDVPAGCLEGRQEQDHGTEEKDPCEAEKTPNPPSPEGLTVEAEAKADKSRWAAFCHGRLLSARRKPRWKMPE 720 
WD40-rpts      (_________________WD14________________)                                         

Query      721 LRWPSIYQALRCHELAFVSALGEKPDLSVPGSDLFPVGFCSQETEAALPERKKLSPWSGFLPEC 784 
WD40-rpts                                                                      

14 WD40-repeats found in QUERY=ENSMUSP00000113092 (Len=784):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    43-83       7.11  408.32  0.00020       12.5%     52.78
  WD 2:  Seg  8    84-129      5.51  342.38  0.00151       17.5%     38.33
  WD 3:  Seg 12   132-170      8.98  485.42  1.8e-05       37.5%     51.84
  WD 4:  Seg 16   175-213      9.17  493.33  1.4e-05       35.0%     56.49
  WD 5:  Seg 20   217-259      6.33  376.23  0.00053       20.0%     53.80
  WD 6:  Seg 24   263-301      8.71  474.34  2.5e-05       25.0%     56.01
  WD 7:  Seg 28   305-345      8.54  467.40  3.1e-05       35.0%     56.65
  WD 8:  Seg 32   349-391      5.87  357.32  0.00095       20.0%     55.91
  WD 9:  Seg 36   397-443      6.27  373.76  0.00057       27.5%     44.12
  WD10:  Seg 40   454-505      5.15  327.33  0.00241       17.5%     43.46
  WD11:  Seg 44   506-550      7.33  417.54  0.00015       17.5%     53.00
  WD12:  Seg 48   564-602      8.35  459.71  4.0e-05       27.5%     55.01
  WD13:  Seg 52   603-640      3.57  262.02  0.01818        7.5%      8.77
  WD14:  Seg 54   641-679      2.87  233.26  0.04383        7.5%     -5.13

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   43-83     SP----N-----AEYV--------RWKVH--GDF----VSQLN-------Y--------Y----ESMKAVISSSNHEPTALVI
   WD 2   84-129    -G----S-----L-LN--------RLEHG--GFT----VGATDIKEKLNEI--------R----NVGKNVKMGNSSACLALPQ
   WD 3  132-170    -A----E-----C-NR--------TVFRV--HKG----VKAFS-------F--------C----RRKNLLVTGGLDRIIRVWN
   WD 4  175-213    -G----K-----P-TG--------VLRGH--RAP----VMYVH-------V--------A----FEENKVFSMSADNTVKVWD
   WD 5  217-259    -H----G-----C-CC--------TISSK--ASGIKGELTACL-------Y--------L----PGPRALCVATGTLAFLHLK
   WD 6  263-301    -V----P-----E-SH--------LVRSH--QEP----VVCCR-------Y--------N----PAFRHVVSCCEASVVKVWD
   WD 7  305-345    -G----R-----Q-VS--------EFIGTHGNAG----ITCLT-------F--------D----SSGRRLVTGGRDGCLKIWS
   WD 8  349-391    -G----H-----C-LH--------TLQHD--ENQ----SEVCD-------C--------TYMEVNRNRCVIAVGWDRRINVYF
   WD 9  397-443    FH----H-----F-RKPQPHWQDDLNHGH--KED----ILCVA-------Q--------C----PPF-LLATSSYDGEIIVWN
   WD10  454-505    NTPSPMD-----G-QD--------HREGP--DRS----VSQLA-------FLKTRLTKLD----SASAALISNGPGGSVCFWK
   WD11  506-550    LF----SGSGLVA-NF--------TPSRE--KAQ----VSGIV-------V--------T----SGDTLAYLADQHGFIHVYD
   WD12  564-602    -P----N-----T-VT--------SWRAH--VSM----VTSLE-------L--------I----EGGSIVLSSSLDCTVRLWS
   WD13  603-640    ------Q-----D-GA--------YIGTF--GQN----HPWDV-------F--------T----PDSWGHPRVPFEILTDPRS
   WD14  641-679    -M----P-----T-HR--------VLETD--VPA----GCLEG-------R--------Q----EQDHGTEEKDPCEAEKTPN

   WD40 Template    TG----E-----C-LR--------TLSGH--TSG----VTSVS-------F--------S----PDGKRLVSGSEDGTIKVWD