Input parameters:

  Query = ENSMUSP00000112868 (Len=404)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000112868, Len=404):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDQDYERRLLRQIIIQNENTVPCVSEMRRTLTPANSPVSSPSKHGDRFIPSRAGANWSVNFHRINENEKSPSQNRKAKDA 80  
WD40-rpts                                                    (_______________WD 1______________

Query       81 TSDNGKDGLAYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEHKGLFTVTRLCDLSVEGDSVTSVGWSERGNLVAVGTH 160 
WD40-rpts      )      (_________________WD 2________________)   (_________________WD 3_________

Query      161 KGFVQIWDAAAGKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDHQLLA 240 
WD40-rpts      _______)   (________________WD 4_______________)     (_________________WD 5_____

Query      241 SGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSK 320 
WD40-rpts      ___________)   (__________________WD 6__________________)   (_________________WD

Query      321 HANELVSTHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKTRSTKESVSVLNLF 400 
WD40-rpts       7_________________)   (_________________WD 8________________)                  

Query      401 TRIR 404 
WD40-rpts          

8 WD40-repeats found in QUERY=ENSMUSP00000112868 (Len=404):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    47-81       5.10  325.22  0.00258       17.5%     13.08
  WD 2:  Seg  2    88-126      5.60  346.15  0.00135       10.0%     12.92
  WD 3:  Seg  3   130-168      7.47  423.42  0.00012       32.5%     55.95
  WD 4:  Seg  7   172-208      7.62  429.45  0.00010       37.5%     50.87
  WD 5:  Seg 11   214-252      9.22  495.45  1.3e-05       32.5%     51.22
  WD 6:  Seg 15   256-297      7.69  432.20  9.3e-05       22.5%     41.76
  WD 7:  Seg 19   301-340      6.21  371.39  0.00061       30.0%     48.02
  WD 8:  Seg 23   344-382      9.85  521.50  5.8e-06       32.5%     54.16

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   47-81     ----RFIPSRAGANWSVNFHRINENEKS---PSQNRKAKDAT
   WD 2   88-126    GLAYSALLKNELLGAGIEKVQDPQTEDR---RLQPSTPEHKG
   WD 3  130-168    VTRLCDLSVEGDSVTSVGWSERGNLVAV---GTHKGFVQIWD
   WD 4  172-208    GKKLSMLEGHTARVGALAWNAD--QLSS---GSRDRMILQRD
   WD 5  214-252    LQSERRLQGHRQEVCGLKWSTDHQLLAS---GGNDNKLLVWN
   WD 6  256-297    LSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWN
   WD 7  301-340    GQPLQCIDTG-SQVCNLAWSKHANELVS-THGYSQNQILVWK
   WD 8  344-382    LTQVAKLTGHSYRVLYLAMSPDGEAIVT---GAGDETLRFWN

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD