Input parameters:

  Query = ENSMUSP00000112811 (Len=279)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000112811, Len=279):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTNQYSILFKQEQAHDDAIWSVAWETNKKENIETVVTGSLDDLVKVWKWRDERLELQWSLEGHQLGVVSVDISHTLPIAA 80  
WD40-rpts          (___________________WD 1___________________)     (_________________WD 2_____

Query       81 SSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSPDSQYLATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG 160 
WD40-rpts      ___________)   (_________________WD 3________________)   (_________________WD 4_

Query      161 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 240 
WD40-rpts      _______________)   (_________________WD 5________________)   (_________________W

Query      241 CPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQESN 279 
WD40-rpts      D 6________________)                   

6 WD40-repeats found in QUERY=ENSMUSP00000112811 (Len=279):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-48       8.28  456.51  4.4e-05       27.5%     54.62
  WD 2:  Seg  5    54-92       9.18  493.69  1.4e-05       37.5%     53.03
  WD 3:  Seg  9    96-134      9.46  505.27  9.6e-06       20.0%     54.98
  WD 4:  Seg 13   138-176     10.12  532.77  4.1e-06       37.5%     54.54
  WD 5:  Seg 17   180-218     10.86  563.47  1.6e-06       47.5%     57.18
  WD 6:  Seg 21   222-260     10.65  554.56  2.1e-06       47.5%     56.75

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-48     YSILFKQEQAHDDAIWSVAWETNKKENIETVVTGSLDDLVKVWK
   WD 2   54-92     -LELQWSLEGHQLGVVSVDISHTLP----IAASSSLDAHIRLWD
   WD 3   96-134    -GKQMKSIDAGPVDAWTLAFSPDSQ----YLATGTHMGKVNIFG
   WD 4  138-176    -GKKEYSLDTRGKFILSIAYSPDGK----YLASGAIDGIINIFD
   WD 5  180-218    -GKLLHTLEGHAMPIRSLTFSPDSQ----LLVTASDDGYIKIYD
   WD 6  222-260    -ANLAGTLSGHASWVLNVAFCPDDT----HFVSSSSDKSVKVWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGK----RLVSGSEDGTIKVWD