WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000112647 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000112647 (Len=4126) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000112647, Len=4126): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLPAPDSNTGSSSENKDADLGRCLTADGHYLYTTNSAGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAYGNGHLLHRPV 80
WD40-rpts
Query 81 SFDNKPHSLFQVIDQNTLQVCQTVPMPASPLPVGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELVVENG 160
WD40-rpts
Query 161 VFVANPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPMYTC 240
WD40-rpts
Query 241 GTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFASRADLIDAAGSSLGRGALVPGLGACYDTMNN 320
WD40-rpts
Query 321 MLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKEEAISTNEVINQLLHHVGAMCIHQLNLLATNPNLPITSVLGK 400
WD40-rpts
Query 401 QHPIEARHLSSICDIMEKAMVNGDTCIVRCILVVFQVVFKFFFSPQTERNRDIIRRSGLLLWQLLMAPKDQICPEIQKEV 480
WD40-rpts
Query 481 CLAISSGLNILYPGETEINNLLKLVLTEGERNSGLSQLRDVILTNLAEQLQNNRFGSDEDDHYRLNDELLHYILKIVVRE 560
WD40-rpts (_
Query 561 SCILITKCQTVSKDDFQKLLSTVPAASSCLRYLMAVQNHLLSNTVLIKPDENEDSDSSLQGETLKELKTSILALATQILT 640
WD40-rpts _______________________________________________________________WD 1_____________
Query 641 GCDEVLEMLQQVTTALINSDIPDREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLTMADALMPQLVQLVLYTSQTA 720
WD40-rpts __________________________________________________)
Query 721 LLLKTQCPAFAEMSCSPCGTSDQKCRLFPDERMLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGAR 800
WD40-rpts
Query 801 CLYLRFDTRCSSQYDYDKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKVEGDTVTFSFEMRSGREHNTPD 880
WD40-rpts
Query 881 KAMWGFACTVRAQESSEDVSGGLPFLVDLALGLSVLACSMLRILYNGPEITKEEEACQDLLRSKLLQRCQWQVEANGVIS 960
WD40-rpts
Query 961 PALTPSPSPLPLTIEEDREFTYPADVLVPPVGNYFDLPRIRLPPGIMIKLREISGRARPQFRPSIKEVIQPDVMEEMVVS 1040
WD40-rpts
Query 1041 CVIKHLNLVDALQSLINFQYQEEHAEEYDLLCKIMGETFKKLNAMERQLQSVAELEQKWQSEAEDAMQGKLENNMPFFYD 1120
WD40-rpts
Query 1121 YHFNENKMKELELLCSMKEVSFDGNDLENMVLSLREKFLQEVNSLAQKPSHPLAKTKTLVRSLMNRAELLLHVTIAAQAG 1200
WD40-rpts
Query 1201 LTRSISGTPAETPACKSASETKVASHAVRQPVFLRSMSAPSDLEMIGNEDLEFTRANQRRRHVTSHRSSSFTLLQSLAIE 1280
WD40-rpts
Query 1281 DSRDKPTYSVLLGQLFAFIGTNPDQAVSSSSFLLAAQTRWRRGNTRKQALVHMRELLTAAVRVGGVTHLVGPVTMVLQGG 1360
WD40-rpts
Query 1361 PRIEELTCGGMVEQVQEAFGETMTSVVSLCARYPIACANSIGLLCTIPYTRSEEKCLVRSGLVQLMDRLCSLSSQTESSS 1440
WD40-rpts
Query 1441 SEKQTKKQKVATMAWAAFQVLANRCVEWEKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLN 1520
WD40-rpts
Query 1521 DLSRSHIGKAILSQPACVSKLLSLLLDQRPSPKLVLIILQLCRAALPLMSVEDCGNVELPPWSYSVPSLNSEQEDPSDPA 1600
WD40-rpts
Query 1601 SKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNSLKGDKDPGEESEAVDGKLSIFIHKREDQSSHEVLQPLL 1680
WD40-rpts
Query 1681 SSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEASAALRKATKWAQSGLIVSVGPPVESINPETVSGLSTGDKKK 1760
WD40-rpts
Query 1761 TAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPESNAAQIWTTTAEKVLSRALMYIPQLGKYAESI 1840
WD40-rpts
Query 1841 LENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGISGSIGVVASINEQEGIATVRFPPVDCRRTSQA 1920
WD40-rpts
Query 1921 ADTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIHTSLPATGDGSAPVMAVVRLLAEIRTRACLVMA 2000
WD40-rpts (__________________________________________
Query 2001 QLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEMQCERLRMLYRDCARPPPPPLQADRRQPKEITWSPSRVFP 2080
WD40-rpts ______________WD 2_______________________________________________________)
Query 2081 PVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWEIEIVSYGDTDDDTGPIVSFGFATEAEKRDGAW 2160
WD40-rpts
Query 2161 TNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERTEGTPPPPGQPAKGRVYFTYCGQRLTPYLEDVS 2240
WD40-rpts
Query 2241 GGMWPVVHIQKKNTKTRANFGSRPFAYAEGQAHRNAADLCTDLAEEISANFEALPFAMASDSDNDAGTSIASDPGTHGPP 2320
WD40-rpts
Query 2321 CRIAAVATAQQQYDSDTSCHYKVELSYENFITSGPDPHPPPIADDESDDDDDDDIPQEDHYALLVKAWETKVFPTIRRRF 2400
WD40-rpts
Query 2401 RNEAERKSGLDQIKGALQLGMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGLTVVTRSPDSSNVA 2480
WD40-rpts
Query 2481 SSTVGTALPKFAIRGMLKTFSLHGVVLDVDSVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTN 2560
WD40-rpts
Query 2561 LQIHRELLRCEAALARLYCRMALLNIFAPKLPHLFTRLFHIPAIRDITLEHLQLLSNQLLAPPLPDGTISSSSILLAQSL 2640
WD40-rpts
Query 2641 QHCIHSQSCSATDLFYQGSSQTLREWLSVAITRTLHQGEDSLLELTKQICAFLQTAPEQFPSEEFPVSESKVSMDVNFPG 2720
WD40-rpts
Query 2721 AAFVVVSCKESQSGFRKDSSLYKAPWARVLVYGLGHKVKRTGQLNLIEAACYPRDASPANTGLAPPPTADQYPSVVLSTD 2800
WD40-rpts
Query 2801 KVHIKLGVSPPPGAVLVLHSLPLEFPLAMAFAEQLLSWKSEDSDGKSEDEPDSIPASVLLHVVELLGNFLWTTDMAACVK 2880
WD40-rpts
Query 2881 ELVFHLLAELLRTVHTLEQRKHPAGLSSSIALQLNPCLAMLMALQSELHKLYDEETQSWVSSSACGGSGAAAVGDQGRFS 2960
WD40-rpts
Query 2961 TYFHALMEGCLAVAEVTLPTNISVTASGVTSTTTPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSNKRQSS 3040
WD40-rpts
Query 3041 RASDADSTVLSIGGSKPEDMLWFHRALTLLIILRHLTKKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEA 3120
WD40-rpts
Query 3121 VVRGAIRKACNAHGGVFKDEIYIPLQDEDPKKPKDKAEGSDSKVESEKLLGFPSVDSLEGSTSSSLAPAMSISASASTSQ 3200
WD40-rpts
Query 3201 ASVCSSQCVSQTASDLSVDPLPSGLELPVPPVLLEPHVVSSQESLDISLCSTGSLGSLGSLGEPLDNPETASVSDVGSMY 3280
WD40-rpts
Query 3281 TVTSLDTQPLATRPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPG 3360
WD40-rpts
Query 3361 LEDYFSDKSIKGEKLVPGAREVLTEIFKSCAHSEQTLSLTPAKPIRVSDIYLSKEQINSQTPGNLLHLFFTNVRPPKKVL 3440
WD40-rpts
Query 3441 EDQLTQILRKYGVPKPKLDKSKYSKAGKEQHPVKVVSTKRPVTKPPAKDKAVLSSLSRTALSEKKPTVKPKSPEKSKPDE 3520
WD40-rpts
Query 3521 KDPEKSPTKKQEVPEEKYLTLEGFHKFVIDRAKQDIRSVWRAILSCGYDLHFERCACIDVRHAQKASRKWTLEMDVALVQ 3600
WD40-rpts
Query 3601 YINRLCRHLAITPARLHPHEVYLDPADAADPRMACLSNVPIESLRLRFALLQSLNTTLETFFLPLVELRQTPMYAHSIAA 3680
WD40-rpts
Query 3681 LLKEAKGLIFYDTKVTVMNRVLNATVQRTADHAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGG 3760
WD40-rpts
Query 3761 DPTYAFNIRFTGEEVHGTSGSFRHFLWQVCKELQSSSLSLLLLCPSSAVNKNKGKYILTPSPITYGEEQLLHFLGQLLGI 3840
WD40-rpts
Query 3841 AIRADVPLPLDLLPSFWKTLVGEPLDPDQDLQEADILTYNYVKKFESINDESELEALCAEIASQHLATESPEGPKPCCRF 3920
WD40-rpts
Query 3921 TYLTMTGEEVELCSRGRHIPVAWENKDIYAAAIRSLRLRELQNMECVTAVRAGLGSIIPLQLLTTLSPLEMELRTCGLPY 4000
WD40-rpts
Query 4001 INLEFLKAHTMYQVGLMETDQHIELFWGALEMFTQEELCKFIKFACNQERIPFTCPCKDGGPDTAHVPPYPMKIAPPDGT 4080
WD40-rpts
Query 4081 AGPPDSRYIRVETCMFMIKLPQYSSLETMLEKLRCAIHYREDPLSG 4126
WD40-rpts
 2 WD40-repeats found in QUERY=ENSMUSP00000112647 (Len=4126): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 13 559-691 3.57 262.20 0.01808 25.0% 6.68 WD 2: Seg 32 1958-2074 3.43 256.44 0.02159 27.5% -6.80Multiple sequence alignment of 2 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 559-691 RESCILITKCQTVSKDDFQKLLSTVPAASSCLRYLMAVQNHLLSNTVLIKP-------------------------D---------------------------ENED----------------SDSSLQGETLKELKTSILALATQILTGCDEVLEMLQQVTTALINSDIPDREQRLKGLEQVTKATMLGHLLPVLLTSL WD 2 1958-2074 LLPQEGSLSIHTSL----------PAT-------------------GDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEMQCERLRMLYRDCARPPPP------------------PL---------QADRRQPKEITWS---------------------------- WD40 Template TGECLRTLSGHTSG----------VTS-------------------VSFSP-------------------------D---------------------------GKRL----------------VSGSEDG------------------TI------------------KVWD---------------------------- |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |