Input parameters:

  Query = ENSMUSP00000112614 (Len=453)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000112614, Len=453):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSPVLQEDDEKDENIPKMLCQMDNHLACVNCVRWSNSGMYLASGGDDKLIMVWKRATYIGPSTVFGSSGKLANVEQWRCV 80  
WD40-rpts                    (_________________WD 1_________________)                      (___

Query       81 SILRSHSGDVMDVAWSPHDAWLASCSVDNTVVIWNAVKFPEILATLRGHSGLVKGLTWDPVGKYIASQADDRSLKVWRTL 160 
WD40-rpts      ______________WD 2________________)    (_________________WD 3________________)  

Query      161 DWQLETSITKPFDECGGTTHVLRLSWSPDGHYLVSAHAMNNSGPTAQIIEREGWKTNMDFVGHRKAVTVVKFNPKIFKKK 240 
WD40-rpts               (__________________WD 4_________________)   (_________________________W

Query      241 QKNGSSTKPSCPYCCCAVGSKDRSLSVWLTCLKRPLVVIHELFDKSIMDISWTLNGLGILVCSMDGSVAFLDFSQDELGD 320 
WD40-rpts      D 5_________________________)    (_________________WD 6________________)    (___

Query      321 PLSEEEKSRIHQSTYGKSLAIMTEAQLSTAVIENPEMLKYQRRQQQQQLDQKNATTRETSSASSVTGVVNGESLEDIRKN 400 
WD40-rpts      _________________WD 7___________________) (_________________WD 8________________

Query      401 LLKKQVETRTADGRRRITPLCIAQLDTGYSLLHQAFCGLVWGGLLFFCCQLAS 453 
WD40-rpts      )                                                    

8 WD40-repeats found in QUERY=ENSMUSP00000112614 (Len=453):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    15-54       8.67  472.93  2.6e-05       32.5%     53.54
  WD 2:  Seg  6    77-115      9.14  492.28  1.4e-05       32.5%     55.90
  WD 3:  Seg 10   120-158      9.81  520.03  6.1e-06       37.5%     53.75
  WD 4:  Seg 15   170-210      6.09  366.10  0.00072       30.0%     39.75
  WD 5:  Seg 18   214-269      6.58  386.56  0.00038       30.0%     58.14
  WD 6:  Seg 22   274-312      7.50  424.43  0.00012       15.0%     57.03
  WD 7:  Seg 26   317-361      2.92  235.13  0.04141       12.5%     26.80
  WD 8:  Seg 29   363-401      6.22  371.62  0.00061       12.5%     25.47

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-54     IPKMLCQMDNH-------LACVNCVRWSNS-----------------GMYLASGGD----DKLIMVWK
   WD 2   77-115    -WRCVSILRSH-------SGDVMDVAWSPH-----------------DAWLASCSV----DNTVVIWN
   WD 3  120-158    -PEILATLRGH-------SGLVKGLTWDPV-----------------GKYIASQAD----DRSLKVWR
   WD 4  170-210    ---KPFDECGG-------TTHVLRLSWSPD-----------------GHYLVSAHAMNNSGPTAQIIE
   WD 5  214-269    -WKTNMDFVGH-------RKAVTVVKFNPKIFKKKQKNGSSTKPSCPYCCCAVGSK----DRSLSVWL
   WD 6  274-312    -RPLVVIHELF-------DKSIMDISWTLN-----------------GLGILVCSM----DGSVAFLD
   WD 7  317-361    --ELGDPLSEEEKSRIHQSTYGKSLAIMTE-----------------AQLSTAVIE----NPEMLKYQ
   WD 8  363-401    -RQQQQQLDQK-------NATTRETSSASS-----------------VTGVVNGES----LEDIRKNL

   WD40 Template    TGECLRTLSGH-------TSGVTSVSFSPD-----------------GKRLVSGSE----DGTIKVWD