Input parameters:

  Query = ENSMUSP00000112500 (Len=623)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000112500, Len=623):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGPGAPCDPCAPAAVWKRHIVRQLRHRDRTQKALFLELVPAYNHLLEKAELLAKFSEKLKSEPKDAISTRHEDWREEVS 80  
WD40-rpts                                                                                      

Query       81 GTGPDQVSSPASLRVKWQQEKKGLQLVCGEMAYQVVKKSAALDTLQSQLEERQDRLEALQACVVQLQEARAQQSRQLEER 160 
WD40-rpts                                                                                      

Query      161 QAENAAQREAYETLLQQAVHQEAALRRLQEEARDLLEQLVQRKARAAAERNLRNERRERANQALVSQELKKAAKRTVSIS 240 
WD40-rpts                                                                                      

Query      241 EIPNTLEDGTKEETVALAPAALPEFSESETCEKWKRPFRSASATSLTLSRCVDVVKGLLDFKKRRGHSVGGAPEQRYQSI 320 
WD40-rpts                                                             (_____________WD 1_______

Query      321 PVCVSAQIPSQAQDVLDAHLSEVNAVCFGPNSSLLATGGADRLIHLWNVVGGRLEANQTLEGAGGSITSVDFDPSGSQVL 400 
WD40-rpts      _____)   (_________________WD 2________________)(___________________WD 3________

Query      401 AATYNQAAQLWKVGETQSKETLSGHKDKVTAAKFKLTRHQAVTGSRDRTVKEWDLGRAYCSRTINVLSYCNDVVCGDHII 480 
WD40-rpts      ___________)   (_________________WD 4________________)   (_______________WD 5___

Query      481 ISGHNDQKIRFWDSRGPHCIQVIPVQGRVTSLHLSYDQLHLLSCSRDNTLKVIDLRISNIRQVFRADGFKCSSDWTKAVF 560 
WD40-rpts      ____________)  (_________________WD 6________________)   (___________________WD 

Query      561 SPDRSYALAGSSNGDLYIWDVNTGKLETSLQGPHCTAVNAVAWCFSGNHVVSVDQGRKVVLWH 623 
WD40-rpts      7__________________)   (_________________WD 8_________________)

8 WD40-repeats found in QUERY=ENSMUSP00000112500 (Len=623):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   296-326      2.95  236.71  0.03946       15.0%     29.22
  WD 2:  Seg  5   330-368      9.52  507.92  8.9e-06       30.0%     44.61
  WD 3:  Seg  8   369-412      9.18  493.81  1.4e-05       27.5%     51.81
  WD 4:  Seg 12   416-454     10.21  536.44  3.7e-06       40.0%     52.70
  WD 5:  Seg 16   458-493      6.66  389.91  0.00035       22.5%     46.58
  WD 6:  Seg 20   496-534      8.12  450.18  5.3e-05       35.0%     53.45
  WD 7:  Seg 24   538-580      7.92  441.69  6.9e-05       27.5%     55.27
  WD 8:  Seg 28   584-623      7.86  439.43  7.4e-05       25.0%     49.39

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  296-326    KG--------LLDF-K----KRRGHSVGGAPEQRYQSI-----PVCVSA
   WD 2  330-368    -S----QAQDVLDA-H----LSEVNAVCFGPNSSLLATGGADRLIHLWN
   WD 3  369-412    VVGGRLEANQTLEG-A----GGSITSVDFDPSGSQVLAATYNQAAQLWK
   WD 4  416-454    -T----QSKETLSG-H----KDKVTAAKFKLTRHQAVTGSRDRTVKEWD
   WD 5  458-493    -A----YCSRTINV-L----SY---CNDVVCGDHIIISGHNDQKIRFWD
   WD 6  496-534    -G----PHCIQVIP-V----QGRVTSLHLSYDQLHLLSCSRDNTLKVID
   WD 7  538-580    -S----NIRQVFRA-DGFKCSSDWTKAVFSPDRSYALAGSSNGDLYIWD
   WD 8  584-623    -G----KLETSLQGPH----CTAVNAVAWCFSGNHVVSVDQGRKVVLWH

   WD40 Template    TG----ECLRTLSG-H----TSGVTSVSFSPDGKRLVSGSEDGTIKVWD