Input parameters:

  Query = ENSMUSP00000112491 (Len=841)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000112491, Len=841):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATGGRAWGGDRARAGAAGAGGGCGGAMAERGPAFCGLYDTSSLLQYCNDDNLSGTSGMEVDDRVSALEQRLQLQEDELA 80  
WD40-rpts                                                                                      

Query       81 VLKAALADALRRLRACEEQGAALRARSTPKGRAPPRLGTTASVCQLLKGLPTRTPLNGSGPPRRVGGYATSPSSPKKEAS 160 
WD40-rpts                                                     (___________________WD 1_________

Query      161 SGRSSRRYLSPERLASVRREDPRSRTTSSSSNCSAKKEGKTKEVIFSMEEGSVKMFLRGRPVPMLIPDELAPTYSLDTRS 240 
WD40-rpts      _________)                  (_____________________WD 2____________________)     

Query      241 ELPSSRLKLDWVYGYRGRDCRANLYLLPTGEVVYFVASVAVLYSVEEQRQRHYLGHNDDIKCLAVHPDMVTIATGQVAGT 320 
WD40-rpts                                                    (______________________WD 3_______

Query      321 TKEGKPLPPHVRVWDSVSLSTLHVLGLGVFDRAVCCVAFSKSNGGNLLCAVDESNDHVLSVWDWAKESKVVDSKCSNEAV 400 
WD40-rpts      ______________)(_____________________WD 4_____________________)   (_____________

Query      401 LVATFHPTDPSLLITCGKSHIYFWSLEGGSLSKRQGLFEKHEKPKYVLCVTFLEGGDVVTGDSGGNLYVWGKGGNRITQE 480 
WD40-rpts      ____WD 5________________)        (________________WD 6________________)(________

Query      481 VQGAHDGGVFALCALRDGTLVSGGGRDRRVVLWGSDYSKVQEVEVPEDFGPVRTVAEGRGDTLYVGTTRNSILLGSVHTG 560 
WD40-rpts      ___________WD 7__________________)   (_________________WD 8________________)  (_

Query      561 FSLLVQGHVEELWGLATHPSRAQFVTCGQDKLVHLWSSETHQPVWSRSIEDPARSAGFHPSGSVLAVGTVTGRWLLLDTE 640 
WD40-rpts      ________________WD 9________________)  (_________________WD10________________)  

Query      641 THDLVAIHTDGNEQISVVSFSPDGAYLAVGSHDNLVYVYTVDQGGRKVSRLGKCSGHSSFITHLDWAQDSTCFVTNSGDY 720 
WD40-rpts       (_________________WD11________________)       (_________________WD12___________

Query      721 EILYWDPVTCKQITSADTVRNVEWATATCVLGFGVFGIWPEGADGTDINAVARSHDGKLLVSADDFGKVHLFSYPCCQPR 800 
WD40-rpts      _____)                   (_____________________WD13_____________________)      (

Query      801 ALSHKYGGHSSHVTNVAFLWDDSMALTTGGKDTSVLQWRVA 841 
WD40-rpts      _________________WD14_________________)  

14 WD40-repeats found in QUERY=ENSMUSP00000112491 (Len=841):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   128-170      5.90  358.52  0.00092       22.5%     21.38
  WD 2:  Seg  7   189-235      3.76  270.14  0.01416       10.0%     24.50
  WD 3:  Seg 15   287-335      7.00  403.61  0.00023       27.5%     54.46
  WD 4:  Seg 19   336-383      5.32  334.49  0.00193       27.5%     45.19
  WD 5:  Seg 23   387-425      7.10  407.84  0.00020       15.0%     57.53
  WD 6:  Seg 27   434-471      4.90  317.23  0.00330       25.0%     43.14
  WD 7:  Seg 31   472-514      7.25  414.11  0.00016       22.5%     53.46
  WD 8:  Seg 35   518-556      6.65  389.46  0.00035       12.5%     55.67
  WD 9:  Seg 39   559-597      7.53  425.73  0.00011       15.0%     54.76
  WD10:  Seg 43   600-638      6.43  380.32  0.00047       20.0%     55.84
  WD11:  Seg 47   642-680      8.67  472.84  2.6e-05       30.0%     58.28
  WD12:  Seg 51   688-726      8.10  449.09  5.5e-05       32.5%     52.63
  WD13:  Seg 57   746-793      6.89  399.28  0.00026       27.5%     46.47
  WD14:  Seg 61   800-839      6.68  390.65  0.00034       30.0%     53.41

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  128-170    KGL---P--------TRTPLNGSG-------PPRRVGGYATS-PSSP----KKEASSGRSS----------RRYLS
   WD 2  189-235    SSS---N--------CSA---KKEGKTKEVIFSMEEGSVKMF-LRGR----PVPMLIPDEL----------APTYS
   WD 3  287-335    EQR------------QRH---YLG-------HNDDIKCLAVH-PDMV----TIATGQVAGTTKEGKPLPPHVRVWD
   WD 4  336-383    SVS---L----STLHVLG---LGV-------FDRAVCCVAFS-KSNGGNLLCAVDESNDHV----------LSVWD
   WD 5  387-425    -ES---K--------VVD---SKC-------SNEAVLVATFH-PTDP----SLLITCGKSH----------IYFWS
   WD 6  434-471    -RQ---G--------LFE---KHE-------KPKYVLCVTFL-EGGD-----VVTGDSGGN----------LYVWG
   WD 7  472-514    KGGNRIT--------QEV---QGA-------HDGGVFALCAL-RDGT----LVSGGGRDRR----------VVLWG
   WD 8  518-556    -SK---V--------QEV---EVP-------EDFGPVRTVAE-GRGD----TLYVGTTRNS----------ILLGS
   WD 9  559-597    -TG---F--------SLL---VQG-------HVEELWGLATH-PSRA----QFVTCGQDKL----------VHLWS
   WD10  600-638    -TH---Q--------PVW---SRS-------IEDPARSAGFH-PSGS----VLAVGTVTGR----------WLLLD
   WD11  642-680    -HD---L--------VAI---HTD-------GNEQISVVSFS-PDGA----YLAVGSHDNL----------VYVYT
   WD12  688-726    -VS---R--------LGK---CSG-------HSSFITHLDWA-QDST----CFVTNSGDYE----------ILYWD
   WD13  746-793    TAT---CVLGFGVFGIWP---EGA-------DGTDINAVARS-HDGK----LLVSADDFGK----------VHLFS
   WD14  800-839    -RA---L--------SHK---YGG-------HSSHVTNVAFLWDDSM----ALTTGGKDTS----------VLQWR

   WD40 Template    TGE---C--------LRT---LSG-------HTSGVTSVSFS-PDGK----RLVSGSEDGT----------IKVWD