Input parameters:

  Query = ENSMUSP00000112321 (Len=357)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000112321, Len=357):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFVARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFD 80  
WD40-rpts      (_________________WD 1_________________)(_____________________WD 2______________

Query       81 RTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEAPDVMNLSQWSLQHEVS 160 
WD40-rpts      ______)    (_______________________WD 3_______________________)(________________

Query      161 CKLCCSCISWNPSSSRAHPPMIAVGSDDSSPNSMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILAV 240 
WD40-rpts      _______WD 4_______________________)        (_____________________WD 5___________

Query      241 ATKDVRIFTLKPLRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILK 320 
WD40-rpts      __________)                (_________________WD 6________________)      (_______

Query      321 GNGSPVNGSSQLGNSNPSLSSNIPNLQNSLNGTSASR 357 
WD40-rpts      __________WD 7________________)      

7 WD40-repeats found in QUERY=ENSMUSP00000112321 (Len=357):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40      10.63  553.94  2.1e-06       30.0%     55.52
  WD 2:  Seg  5    41-87       7.70  432.66  9.2e-05       32.5%     54.38
  WD 3:  Seg  9    92-143      6.80  395.53  0.00029       32.5%     57.45
  WD 4:  Seg 13   144-195      4.88  316.43  0.00338       17.5%     25.79
  WD 5:  Seg 17   204-251      6.98  403.09  0.00023       22.5%     48.49
  WD 6:  Seg 21   268-306      8.27  456.44  4.4e-05       27.5%     55.29
  WD 7:  Seg 25   313-351      6.30  374.72  0.00055       17.5%     41.42

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     MF----V----------ARSIAADHKDLIHDVSFDFH----GRR-----MATCSSDQSVKVWD
   WD 2   41-87     KS----E-----SGDWHCTASWKTHSGSVWRVTWAHP--EFGQV-----LASCSFDRTAAVWE
   WD 3   92-143    ES----NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPK--HMGLM-----LATCSADGIVRVYE
   WD 4  144-195    AP----D---VMNLSQWSLQHEVSCKLCCSCISWNPS----SSRAHPPMIAVGSDDSSPNSMA
   WD 5  204-251    ENTRKYA----------KAETLMTVTDPVHDIAFAPNLGRSFHI-----LAVATKDVRIFTLK
   WD 6  268-306    -I----H----------IVAQFDNHNSQVWRVSWNIT----GTV-----LASSGDDGCVRLWK
   WD 7  313-351    -W----K----------CTGILKGNGSPVNGSSQLGN----SNP-----SLSSNIPNLQNSLN

   WD40 Template    TG----E----------CLRTLSGHTSGVTSVSFSPD----GKR-----LVSGSEDGTIKVWD