Input parameters:

  Query = ENSMUSP00000112018 (Len=611)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000112018, Len=611):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHSSPTSTRKQASFAASASAQPRKSISFINPSKSSAGKGYAASNPNKLAVSRTMGFLTDMKPAEKLNVPSAKTVQVLDSK 80  
WD40-rpts                                                                                      

Query       81 GVDVTPRPLYHPDPHAASAKPNKLLTSQEGSLGSDYISSYSLYQNTLNPSMLGQYTRSVLGSSSVSKSSISTTESMSEDL 160 
WD40-rpts                                                                                      

Query      161 EDSSYKRDRLASFTDVRVLRSTAEAAISKEELEKTIEIILTETETLRFFDLPTVMFSTESEEAEKIIEKNKKYETLCRNR 240 
WD40-rpts                                                                                      

Query      241 LGNDLYVERMMQTFNGAPKNKEVQCEKIILEEKGVVATTWDLYDSYNIPETLLAAKRSGYSSKGSLPAKDRDPKIQDSES 320 
WD40-rpts                                                                                      

Query      321 SSLMDIENVILAKVQEDEEDNSEAILKSDKLHQDLFYMERVLMENVFQPKLAAYRQLPVYKEHEPEEPEETLQVENLKVA 400 
WD40-rpts                                                                                      

Query      401 EDEPKKEDEEEVEMELELEIATEQSTIPANLERLWSFSCDLTKGLNVSSLSWNKANPDLLAVGYGNFGFREQKKGMACCW 480 
WD40-rpts                                                                                      

Query      481 SIKNPMWPERIYQSSYGVTSVDFSNSSPNLLAVGYHNGTVAIYNVQSSHNIPVLDSSESPQKHLGPVWQVQWIEQDRGTT 560 
WD40-rpts       (___________________WD 1__________________)           (____________________WD 2

Query      561 GDDKREILVSISADGRISKWIIRKGLDCHGHEHLSGWYRRRPYSQVFLFIQ 611 
WD40-rpts      ____________________)                              

2 WD40-repeats found in QUERY=ENSMUSP00000112018 (Len=611):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   482-524      3.30  250.98  0.02552       27.5%     45.72
  WD 2:  Seg 14   536-581      3.18  246.06  0.02967       30.0%     41.86

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  482-524    IKNPMWPERIYQSSYGVTSVDFSNSSPN---------LLAVGYHNGTVAIYN
   WD 2  536-581    SSE-----SPQKHLGPVWQVQWIEQD-RGTTGDDKREILVSISADGRISKWI

   WD40 Template    TGECL--RTLSGHTSGVTSVSFSPDG-K---------RLVSGSEDGTIKVWD