Input parameters:

  Query = ENSMUSP00000111350 (Len=256)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000111350, Len=256):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTQQPLRGVTSLHFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSVGLVEMLHRSNLLALVGGGSSPKFSEISVL 80  
WD40-rpts      (______________WD 1_____________)                                               

Query       81 IWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYSFPDSPRKLFEFDTRDNPKGLCDLCPSLEKQLLV 160 
WD40-rpts                                                     (____________________WD 2________

Query      161 FPGHKCGSLQLVDLASTKPGTSSAPFTINAHQSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATL 240 
WD40-rpts      ____________)        (_________________WD 3_________________)                   

Query      241 YCHLCRWDLPQICLHS 256 
WD40-rpts                      

3 WD40-repeats found in QUERY=ENSMUSP00000111350 (Len=256):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       3.82  272.35  0.01323       20.0%     42.63
  WD 2:  Seg 12   128-173      4.42  297.05  0.00617       22.5%     38.94
  WD 3:  Seg 16   182-221      7.01  404.15  0.00022       32.5%     50.67

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-33     ------MT-----QQPLRGVTSLHFNQDQSCFC-CAMETG--VRIYN
   WD 2  128-173    FPDSPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGS-LQLVD
   WD 3  182-221    -SSAPFTI-----NAHQSDVACVSLNQPGTVVA-SASQKGTLIRLFD

   WD40 Template    TGECLRTL-----SGHTSGVTSVSFSPDGKRLV-SGSEDGT-IKVWD