Input parameters:

  Query = ENSMUSP00000111264 (Len=312)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000111264, Len=312):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAALFPPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIWSLQTRRIVTTLNGHGGQGVIWLKTLPQGH 80  
WD40-rpts             (____________________WD 1___________________)   (_________________WD 2___

Query       81 QLLSQGRDLRLCLWDLEEGRNTIMDSVQLDSVGFCRGSILVRGQQCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADAR 160 
WD40-rpts      ______________)          (________________WD 3________________)   (_____________

Query      161 PGMPMCLGLWQDGSVTLWDISERKVCSQITCHEEPVMGLDFDSQKAKGISGSAGKVLAVWSLDDQQSLQVKKTHELTNPG 240 
WD40-rpts      _WD 4_____________)   (_________________WD 5________________)   (_______________

Query      241 IAEVTIRPDHKILATAGWDHRIRVFHWRTMKPLAVLAFHSAPVYCVAFAADGLLAAGSKDQRISIWSLYPCP 312 
WD40-rpts      ___WD 6__________________)   (________________WD 7________________)     

7 WD40-repeats found in QUERY=ENSMUSP00000111264 (Len=312):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-52       7.92  441.74  6.9e-05       30.0%     55.24
  WD 2:  Seg  5    56-95       8.57  468.75  3.0e-05       32.5%     57.39
  WD 3:  Seg 10   106-143      5.24  331.16  0.00214       12.5%     39.60
  WD 4:  Seg 14   147-179      5.60  345.98  0.00135       17.5%     42.24
  WD 5:  Seg 17   183-221      9.09  490.23  1.5e-05       20.0%     56.37
  WD 6:  Seg 21   225-266      7.98  444.40  6.4e-05       27.5%     57.13
  WD 7:  Seg 25   270-307      8.32  458.29  4.1e-05       35.0%     52.29

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-52     PPGPRFVLRGT---QS-AVNTLHFCPPSQAAGNPLLFSGSQNGLVHIWS
   WD 2   56-95     -RRIVTTLNGH---GGQGVIWLKTLPQGH-----QLLSQGRDLRLCLWD
   WD 3  106-143    SVQL--DSVGF---CR-GSILVRGQQCWM-----LAVPGKGSDEVQILE
   WD 4  147-179    -KTSVCTLKPE----------ADARPGMP-----MCLGLWQDGSVTLWD
   WD 5  183-221    -RKVCSQITCH---EE-PVMGLDFDSQKA-----KGISGSAGKVLAVWS
   WD 6  225-266    -QQSLQVKKTHELTNP-GIAEVTIRPDHK-----ILATAGWDHRIRVFH
   WD 7  270-307    -MKPLAVLAFH---SA-PVYCVAFAADG------LLAAGSKDQRISIWS

   WD40 Template    TGECLRTLSGH---TS-GVTSVSFSPDGK-----RLVSGSEDGTIKVWD