Input parameters:

  Query = ENSMUSP00000111218 (Len=617)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000111218, Len=617):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRRETEALLQSIGISPEPPLVSTPSD 80  
WD40-rpts                                                                                      

Query       81 AGSQDSGDLGPLTRTLQWDTDPSVLQLQSDSELGRRLHKLGVSKVTQVDFLPREVVSYSKETQTPLATHQSEEDEEDEEM 160 
WD40-rpts                                                                                      

Query      161 VEPKIGHDSELENQEKKQETKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSGRELEEKDGDVQ 240 
WD40-rpts                                                                                      

Query      241 AGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYSNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCF 320 
WD40-rpts                                                               (___________________WD 

Query      321 ARFHPNLVVGGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGKMCSWSLDMLSTPQE 400 
WD40-rpts      1___________________)           (_________________WD 2________________)(________

Query      401 SMELVYNKSKPVAVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSKAGIGEVFEGHQGPVTGINCHMAVGPIDFSHLFVTS 480 
WD40-rpts      ______________WD 3_____________________)     (____________________WD 4__________

Query      481 SFDWTVKLWTTKHNKPLYSFEDNADYVYDVMWSPVHPALFACVDGMGRLDLWNLNSDTEVPTASVAIEGASALNRVRWAQ 560 
WD40-rpts      _________)   (_________________WD 5_________________)(____________________WD 6__

Query      561 GGKEVAVGDSEGRIWIYDVGELAVPHNDEWTRFARTLVEIRANRADSEEEGAVELAA 617 
WD40-rpts      _________________)                                       

6 WD40-repeats found in QUERY=ENSMUSP00000111218 (Len=617):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   298-341      3.72  268.20  0.01503       30.0%     41.51
  WD 2:  Seg 11   353-391      4.94  318.68  0.00315       25.0%     43.44
  WD 3:  Seg 14   392-440      2.78  229.48  0.04914       27.5%     47.88
  WD 4:  Seg 18   446-490      5.12  325.98  0.00252       25.0%     42.32
  WD 5:  Seg 21   494-533      4.48  299.78  0.00567       20.0%     52.13
  WD 6:  Seg 25   534-578      4.49  300.00  0.00563       20.0%     55.01

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  298-341    MKF-----K--------KTTPEYVFHCQSSVMSVCF--ARFH------PNLV-VGGTYSGQIVLWD
   WD 2  353-391    TP----------------LS---AAAHTHPVYCVNVVGTQ-N------AHNL-ITVSTDGKMCSWS
   WD 3  392-440    LDM-----LSTPQESMELVY---NKSKPVAVTGMAF--PTGD------VNNF-VVGSEEGTVYTAC
   WD 4  446-490    -AG-----I--------GEV---FEGHQGPVTGINC--HM-AVGPIDFSHLF-VTSSFDWTVKLWT
   WD 5  494-533    -NK-----P--------LYS---FEDNADYVYDVMW--SP-V------HPALFACVDGMGRLDLWN
   WD 6  534-578    LNSDTEVPT--------ASV---AIEGASALNRVRW--AQ-G------GKEV-AVGDSEGRIWIYD

   WD40 Template    TGE-----C--------LRT---LSGHTSGVTSVSF--SP-D------GKRL-VSGSEDGTIKVWD