Input parameters:

  Query = ENSMUSP00000111153 (Len=296)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000111153, Len=296):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEHAAPLAVPLGQAEVFQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALSSEAKEESKKPVVVFHAHDGPVY 80  
WD40-rpts                   (_________________WD 1________________)             (______________

Query       81 SMVSTDRHLLSAGDGEVKGWLWAEILKKGCKELWRRQPPYRTSLEVPEINALLLVPKENSLILAGGDCQLHSMDLETGAF 160 
WD40-rpts      __WD 2________________)            (_________________WD 3________________)   (__

Query      161 TRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATDSDWMVCGGGPA 240 
WD40-rpts      _______________WD 4________________)   (____________________WD 5________________

Query      241 LTLWHLRSSTPTTVFPIRAPQKHVTFYQDLVLTASGNSCRVDVFTNLGYRAFSLSF 296 
WD40-rpts      ____)   (________________WD 6________________)          

6 WD40-repeats found in QUERY=ENSMUSP00000111153 (Len=296):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    14-52       9.15  492.60  1.4e-05       30.0%     50.96
  WD 2:  Seg  5    66-103      6.62  388.07  0.00037       20.0%     48.93
  WD 3:  Seg  9   116-154      7.67  431.46  9.5e-05       12.5%     48.31
  WD 4:  Seg 13   158-196     10.35  542.37  3.0e-06       32.5%     53.43
  WD 5:  Seg 17   200-245      5.68  349.23  0.00122       15.0%     48.49
  WD 6:  Seg 21   249-286      6.61  387.66  0.00037       12.5%     52.00

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-52     AEVFQALQRLHMTIFS--------QSVSPCGKFLAAGNNYGQIAIFS
   WD 2   66-103    KKPVVVFHAHDGPVYS--------M-VSTDRHLLSAGDGEVKGWLWA
   WD 3  116-154    RQPPYRTSLEVPEINA--------LLLVPKENSLILAGGDCQLHSMD
   WD 4  158-196    GAFTRALRGHTDYIHC--------LALRERSPEVLSGGEDGAVRLWD
   WD 5  200-245    AKEVQTIEVYKHEECSRPHNGRWIGCLATDSDWMVCGG-GPALTLWH
   WD 6  249-286    STPTTVFPIRAP-QKH--------VTFYQDLVLTASGNSCRVDVFTN

   WD40 Template    GECLRTLSGHTSGVTS--------VSFSPDGKRLVSGSEDGTIKVWD