Input parameters:

  Query = ENSMUSP00000111055 (Len=1429)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000111055, Len=1429):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 METEPDQEHLDQNPCARTVEEELSKSFNLEASLSKFSCLDLDKELEFRSDLIDDKEFDIPQVDTPPTLESILNETDDEDE 80  
WD40-rpts                                                                                      

Query       81 SFVLEDPTLLNVDTIDSHSYDTSSVASSDSGDRANLKRKKKLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAI 160 
WD40-rpts                                                                                      

Query      161 AVSSLIAVGTSHGLALIFGKDQNQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDA 240 
WD40-rpts                                   (________________WD 1________________)             

Query      241 HPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLHSKPELKDHPITQFSLLAM 320 
WD40-rpts                                                                                      

Query      321 ASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVNNSVNPMLAFCRGDMVHFLLVKRDESGAIHVTKQKHLHL 400 
WD40-rpts                                                                                      

Query      401 YYDLINFTWINSRTVVLLDSVEKLHVIDRQTQEELETMEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSY 480 
WD40-rpts                                                                                      

Query      481 GGQIFYLGTKSVYVMMLRSWRERMDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDVSKRKAVVADRMVEILFHYADRA 560 
WD40-rpts                                                                                      

Query      561 LKKCPDQGKIQVMEQHFQDTVPVIVDYCLLLQRKDLLFGQMYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLI 640 
WD40-rpts                                                                                      

Query      641 VHFQDKKLLENVEALIVHMDITSLDIQQVVLMCWENRLYDAMVYVYNRGMNEFISPMEKLFKVIAPPLNAGKTLTDEQVV 720 
WD40-rpts                                                                                      

Query      721 MGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSVEASSEEEVYPYVRTLLHFDTREFLNVLALTFEDFK 800 
WD40-rpts                                                                                      

Query      801 NDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLL 880 
WD40-rpts                                                                                      

Query      881 ELLQAGGIVQFEESRLIRMAEKAEFYQICEFMYEREHQYDKIIDCYLHDPLREEEVFNYIHNILSIPGHSAEEKQSVWQK 960 
WD40-rpts                                                                                      

Query      961 AMNHMEELVSLKPCKAAELVATHFSEQIEVVIGQLQNQLLLFKFLRSLLDPREGVHVNQELLQIPPHITEQFIELLCQFS 1040
WD40-rpts                                                                                      

Query     1041 PDQVIQTLQVLECYRLEETIQITQKYQLHEVTAYLLEKKGDAHGAFLLLLERLQSRLQEMTRQDENTKEDILLKGVEDTM 1120
WD40-rpts                                                                                      

Query     1121 VETIALCQRNSQNLNQQQREALWFPLLEAMMTPQKLSSSAAAPHPHCEALKSLTMQVLNSMAAFIALPSILQRILQDPIY 1200
WD40-rpts                                                                                      

Query     1201 GKGKLGEIQGLILGMLDTFNYEQTLLETTASLLNQDLHWSLCNLRASVSRGLNPKQDYCSICLQQYKRRQEMADEIIVFS 1280
WD40-rpts                                                                                      

Query     1281 CGHLYHSFCLQSKECTLEVEGQTRWACHKCSSSNKAGKLSENPSENKKGRITSSQVKMSPSYHQSKGDPPARKANSEPVL 1360
WD40-rpts                                                                                      

Query     1361 DPQQMQAFDQLCRLYRGSSRLALLTELSQNRGGDSCRPFAGPQSGPAFNSVFQKENFQLQLAPPPVAED 1429
WD40-rpts                                                                           

1 WD40-repeats found in QUERY=ENSMUSP00000111055 (Len=1429):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   190-227      5.60  346.17  0.00134       27.5%     44.24

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  190-227    LGS--TSVGGQYGAISALSINNDCSRLLCGFAKGQITMWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD