Input parameters:

  Query = ENSMUSP00000110709 (Len=469)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000110709, Len=469):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAPQQTGSRKRKASEVEQGAGTSSLPGRAAAAAGTGQADGPLLLAKRPRRPVARRSLVHYLKGRALGADGHPGVAGFEGD 80  
WD40-rpts           (_________________WD 1________________)                                    

Query       81 LRSYGVLRLPELLRERQLTLGPLNKVFASQWLNARQVVCGTKCNTLFVVDVQTGRITRIPLMRDRGPGQTRAQPTCGIHA 160 
WD40-rpts                       (______________WD 2_____________)              (_______________

Query      161 IQLNPSKTLLATGGENPNSLAVYQLPTLDPVCLGDRQGHRDWIFAIAWMSDTVAVSGSRDGTVALWRVDSDMFNGSIPWH 240 
WD40-rpts      __WD 3_________________)     (________________WD 4________________)             

Query      241 NNSGIPRYSHIRPRDMEAIPRATTNPGNRKVRALAFSGRNQELGAVSLDGYFHLWKARSSLSRLLSLRLPYCRENVCLTY 320 
WD40-rpts                     (__________________WD 5_________________)   (__________________WD

Query      321 CDELSLYAVGSQSHVSFLDPRQRQQNIKPLCSREGGTGVRSLSFYQHIITVGTGHGSLLFYDIRAQKFLEERASASPDSF 400 
WD40-rpts       6_________________)   (_________________WD 7________________)(_________________

Query      401 LGRTGRKLKLTCGRGWLNQDELWVNYFGGTEEFPNALYTHCYNWPEMKLFVGGGPLPSGLHGNYAGLWS 469 
WD40-rpts      WD 8________________)                                                

8 WD40-repeats found in QUERY=ENSMUSP00000110709 (Len=469):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-44       5.59  345.45  0.00138       20.0%      4.41
  WD 2:  Seg  3    98-130      5.55  343.81  0.00145       17.5%     45.11
  WD 3:  Seg  7   145-184      6.96  402.03  0.00024       20.0%     43.78
  WD 4:  Seg 10   190-227      7.85  438.90  7.6e-05       32.5%     42.26
  WD 5:  Seg 15   256-296      7.00  403.88  0.00022       25.0%     51.00
  WD 6:  Seg 19   300-340      4.57  303.43  0.00506        7.5%     48.94
  WD 7:  Seg 23   344-382      5.55  343.86  0.00144       17.5%     49.32
  WD 8:  Seg 27   383-421      5.74  351.75  0.00113       12.5%     20.36

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-44     TGSRKR-KASEVEQGAGT---SSLPGRAAAAAGTGQ-ADGPLLL
   WD 2   98-130    -------LTLGPLNKVFAS--QWL-NARQVVCGTKC-NTLFVVD
   WD 3  145-184    -RGPGQ-TRAQPTCGIHAI--QLNPSKTLLATGGENPNSLAVYQ
   WD 4  190-227    -PVCLG-DRQGHRDWIFAI--AWMSDT-VAVSGSRD-GTVALWR
   WD 5  256-296    MEAIPRATTNPGNRKVRAL--AFSGRNQELGAVSLD-GYFHLWK
   WD 6  300-340    -SLSRL-LSLRLPYCRENVCLTYCDELSLYAVGSQS-HVSFLDP
   WD 7  344-382    -QQNIK-PLCSREGGTGVR--SLSFYQHIITVGTGH-GSLLFYD
   WD 8  383-421    -IRAQK-FLEERASASPDS--FLGRTGRKLKLTCGR-GWLNQDE

   WD40 Template    TGECLR-TLSGHTSGVTSV--SFSPDGKRLVSGSED-GTIKVWD