Input parameters:

  Query = ENSMUSP00000110708 (Len=501)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000110708, Len=501):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRQADSQTQPSPAEQETPQPAGPSNRSPPTMGPQQTGSRKRKAAEVDQGAGTSSSPGPAAPMATAGEGNAEGSMLLTKRP 80  
WD40-rpts                                          (_________________WD 1_________________)    

Query       81 RRPVAHLSMVNYLKGRALGADGHPGLAGFEGDLRSYGVLRLPELLRERQLTLGPLNKVFASQWLNARQVVCGTKCNTLFV 160 
WD40-rpts                                                  (________________WD 2_______________

Query      161 VDVKTDHIMRIPLMRDRVPDLSRGPPSCGIHAVELNPSKTLLATGGENPNSLAVYQLPTLDPVCLGDCQGHRDWIFAIAW 240 
WD40-rpts      _)              (_________________WD 3_________________)     (________________WD

Query      241 MSDTVAVSGSRDGTVALWKVDPDMFNGSIAWHKDAGLPVYAHISPTDMEAIPKATTNPGNRKVRALAFSNKNQELGAVSL 320 
WD40-rpts       4________________)                              (_________________WD 5_________

Query      321 DGYFHLWKARSSLSRLLSLRLPYCRENVCLTYCDEFSLYAVGSQSHVSFLDLRQGQQNIPPLCSREGGTGVRSLSVHQHI 400 
WD40-rpts      _______)     (________________WD 6________________)    (_________________WD 7___

Query      401 VTVGTGHGSLLFYDIRAQKFLEERSAANPDMFPVPSGRKLKLTCGSGWINQDDLLENYVAGVEDFPNALYTHCYNWPEMK 480 
WD40-rpts      _____________)   (_________________WD 8________________)                        

Query      481 LFVGGGPLASGLHGNYAGLWS 501 
WD40-rpts                           

8 WD40-repeats found in QUERY=ENSMUSP00000110708 (Len=501):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    37-76       4.03  280.95  0.01014       12.5%     -1.67
  WD 2:  Seg  3   125-162      5.89  357.98  0.00093       17.5%     45.79
  WD 3:  Seg  7   177-216      6.45  381.20  0.00045       17.5%     39.38
  WD 4:  Seg 10   222-259      8.19  453.10  4.9e-05       32.5%     52.70
  WD 5:  Seg 16   290-328      8.18  452.70  4.9e-05       22.5%     52.92
  WD 6:  Seg 20   334-371      5.85  356.15  0.00099       10.0%     45.40
  WD 7:  Seg 24   376-414      6.80  395.67  0.00029       17.5%     42.48
  WD 8:  Seg 27   418-456      6.98  402.86  0.00023       10.0%     25.14

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   37-76     GSRKRKAAEVDQGAGTSSSPGPAAPMATAGEGN-AEGSMLL
   WD 2  125-162    -LRERQLTLGPLNKVFASQWL-NARQVVCGTKC-NTLFVVD
   WD 3  177-216    -RVPDLSRGPPSCGIHAVELNPSKTLLATGGENPNSLAVYQ
   WD 4  222-259    -PVCLGDCQGHRDWIFAIAWMSDT-VAVSGSRD-GTVALWK
   WD 5  290-328    -AIPKATTNPGNRKVRALAFSNKNQELGAVSLD-GYFHLWK
   WD 6  334-371    -SRLLSLRLPYCRENVCLTYCDEFSLYAVGS-Q-SHVSFLD
   WD 7  376-414    -QQNIPPLCSREGGTGVRSLSVHQHIVTVGTGH-GSLLFYD
   WD 8  418-456    -QKFLEERSAANPDMFPVPSGRKLKLTCGSGWI-NQDDLLE

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSED-GTIKVWD