Input parameters:

  Query = ENSMUSP00000110692 (Len=1033)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000110692, Len=1033):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEPDTATEAATVAVSDARATVVVVEDEQPGPSTFKEEKITSPFQLKLAAKASKSEKEMDPEYEEKMKADRAKRFEFLLKQ 80  
WD40-rpts                                                                                      

Query       81 TELFAHFIQPSAQKSPTSPLNMKLARPRVKKDDKQSLISVGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGG 160 
WD40-rpts                                                                                      

Query      161 PLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVI 240 
WD40-rpts                                                                                      

Query      241 CFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGT 320 
WD40-rpts                                                                                      

Query      321 PLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSK 400 
WD40-rpts                                                                                      

Query      401 MQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVGNSGKMVALDKLLARIKEQ 480 
WD40-rpts                                                                                      

Query      481 GSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREDKFLEVELLGQREAIDAFNAPNSSKFIFMLSTRAGGLGI 560 
WD40-rpts                             (________________________________WD 1____________________

Query      561 NLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLA 640 
WD40-rpts      ___________)                                                                    

Query      641 KEEMLQMIRHGATHVFACKESELTDEDIVTILERGEKKTAEMNERMQKMGESSLRNFRMDLEQSLYKFEGEDYREKQKLG 720 
WD40-rpts                                                                                      

Query      721 TVEWIEPPKRERKANYAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPEI 800 
WD40-rpts                                                                                      

Query      801 PNPAIAQREEQKKIDGAEPLTPQETEEKDKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSAV 880 
WD40-rpts                                                                                      

Query      881 FWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDRFLICMLHKMGFDR 960 
WD40-rpts                                                                                      

Query      961 ENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMVKFSAFS 1033
WD40-rpts                                                                               

1 WD40-repeats found in QUERY=ENSMUSP00000110692 (Len=1033):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   504-572      2.93  235.82  0.04055       22.5%     30.77

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  504-572    RGYEYSRLDGQTPHEEREDKFLEVELLGQREAIDAFNAPNSSKFIFMLSTRAGGLGINLASAD-VVILYD

   WD40 Template    TGECLRTLSGHTS------------------------------GVTSVSFSPDGKRLVSGSEDGTIKVWD