Input parameters:

  Query = ENSMUSP00000110438 (Len=1161)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000110438, Len=1161):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKFNFRKVLDGLTASSPGSGSSSGSNSGGAGSGSVHPGGTAGLPREEIQESLTSDYFQICKTVRHGFPYQPTALAFDPV 80  
WD40-rpts                      (_________________WD 1_________________)      (_______________WD

Query       81 QKILAIGTRTGAIRILGRPGVDCYCQHESGAAVLQLQFLINEGALVSASSDDTLHLWNLRQKRPAILHSLKFNRERITYC 160 
WD40-rpts       2______________)  (_________________WD 3________________)     (________________

Query      161 HLPFQSKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKSK 240 
WD40-rpts      _WD 4________________)             (__________________WD 5_________________)  (_

Query      241 RAELRVYYDEAIHSIDWHHEGKQFMCSHSDGSLTLWNLKSPSRPFQTTVPHGKSQREGRKSESCKPILKVEYKTCRNSEP 320 
WD40-rpts      ________________WD 6________________)                                           

Query      321 FIIFSGGLSYDKACRRPSLTIMHGKAITVLEMDHPIVEFLTLCETPYPNEFQEPYAVAVLLEKDLIVVDLTQTNFPIFEN 400 
WD40-rpts                                                                                      

Query      401 PYPMDIHESPVTCTAYFADCPPDLILVLYSIGVKHKKQGYSNKEWPVSGGAWNLGAQTYPEIIITGHADGTIKFWDASAM 480 
WD40-rpts                                         (__________________WD 7_________________)    

Query      481 TLQMLYKLKTSKVFEKQKAGEGKQTCELVEEDPFAVQMIYWCPESRIFCVSGVSAYVIIYKFSRHEVTTEIVSLEVRLQC 560 
WD40-rpts                      (____________________WD 8___________________) (_______________WD

Query      561 DVEDIITPEPETSPPFPDLSSQLPPSRSLSGSTNTVSSEGVTKDSIPCLSVKTRPVRMPPGYQADLVIQLVWVDGEPPQQ 640 
WD40-rpts       9_______________)                                                              

Query      641 ITSLSISSAYGIVAFGNCTGLVVVDFIQKTVLLSMGTIDLYRSSDLYQRQPRSPRKNRQFIAGLTELNDSPVPLELERCK 720 
WD40-rpts                                                                                      

Query      721 SPTSDHVNGHCTSPTSQSCSSGKRLSSADVSKVNRWGPGRPPFRKAQSAACMEISLPVTTEETRENSYNRSRSSSISSID 800 
WD40-rpts                                                                                      

Query      801 KDSKEAITALYFMESFARKNDSTVSPCLFVGTSLGMVVLISLNLPSSDEQRFTEPVVVLPSGTFLSLKGAVLTFSCMDRT 880 
WD40-rpts                                                                                      

Query      881 GSLMQPPYEVWRDPNNTDENEKTWKRKLVMNYSSSSQEMGDHQYTIICSEKQAKVFSLPSQTCLYVHNITETSFILQADV 960 
WD40-rpts                                                                                      

Query      961 VVMCNSACLACFCANGHIMIMSLPSLRPMLDVNYLPLTDMRIARTFCFTNEGQALYLVSPTEIQRLTYSQEMCDNIQDML 1040
WD40-rpts                                                                                      

Query     1041 GDLFTPIETPEAQNRGFLKGLFGGSGQTFDREELFGEASAGKASRSLAQHIPGPGSIEGMKGAAGGVMGELTRARIALDE 1120
WD40-rpts                                                                                      

Query     1121 RGQRLGELEEKTAGMMTSAEAFSKHAHELMLKYKDKKWYQF 1161
WD40-rpts                                               

9 WD40-repeats found in QUERY=ENSMUSP00000110438 (Len=1161):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    17-56       2.92  235.15  0.04139       17.5%     -11.64
  WD 2:  Seg  2    63-97       5.89  357.97  0.00093       25.0%     44.48
  WD 3:  Seg  5   100-138      6.79  395.10  0.00029       25.0%     55.83
  WD 4:  Seg  9   144-182      5.98  361.81  0.00083       20.0%     55.91
  WD 5:  Seg 14   196-236      7.22  413.02  0.00017       32.5%     48.60
  WD 6:  Seg 18   239-277      6.68  390.57  0.00034       15.0%     56.48
  WD 7:  Seg 31   436-476      6.03  363.74  0.00078       22.5%     20.75
  WD 8:  Seg 35   497-541      4.24  289.87  0.00770        5.0%     46.11
  WD 9:  Seg 38   543-578      3.04  240.08  0.03561       10.0%     -9.84

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   17-56     SP-----GSGSSSG-SNSGGAGSGSVHP-GGTAGLPREEIQESLTSD
   WD 2   63-97     T----------VRH-GFPYQPTALAFDP-VQKILAIGTRTGAIRILG
   WD 3  100-138    -G-----VDCYCQH-ESGAAVLQLQFLI-NEGALVSASSDDTLHLWN
   WD 4  144-182    -P-----AILHSLK-FNRERITYCHLPF-QSKWLYVGTERGNTHIVN
   WD 5  196-236    NK-----AIELSTK-THPGPVVHLSDSPRDEGKLLIGYENGTVVFWD
   WD 6  239-277    -S-----KRAELRV-YYDEAIHSIDWHH-EGKQFMCSHSDGSLTLWN
   WD 7  436-476    KK-----QGYSNKEWPVSGGAWNLGAQT-YPEIIITGHADGTIKFWD
   WD 8  497-541    QKAGEGKQTCELVE-EDPFAVQMIYWCP-ESRIFCVSGVSAYVIIYK
   WD 9  543-578    S---------RHEV-TTEIVSLEVRLQC-DVEDIITPEPETSPPFPD

   WD40 Template    TG-----ECLRTLS-GHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD