Input parameters:

  Query = ENSMUSP00000110435 (Len=1185)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000110435, Len=1185):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKFNFRKVLDGLTASSPGSGSSSGSNSGGAGSGSVHPGGTAGLPREEIQESLTSDYFQICKTVRHGFPYQPTALAFDPV 80  
WD40-rpts                      (_________________WD 1_________________)      (_______________WD

Query       81 QKILAIGTRTGAIRILGRPGVDCYCQHESGAAVLQLQFLINEGALVSASSDDTLHLWNLRQKRPAILHSLKFNRERITYC 160 
WD40-rpts       2______________)  (_________________WD 3________________)     (________________

Query      161 HLPFQSKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKSK 240 
WD40-rpts      _WD 4________________)             (__________________WD 5_________________)  (_

Query      241 RAELRVYYDEAIHSIDWHHEGKQFMCSHSDGSLTLWNLKSPSRPFQTTVPHGKSQREGRKSESCKPILKVEYKTCRNSEP 320 
WD40-rpts      ________________WD 6________________)                                           

Query      321 FIIFSGGLSYDKACRRPSLTIMHGKAITVLEMDHPIVEFLTLCETPYPNEFQEPYAVAVLLEKDLIVVDLTQTNFPIFEN 400 
WD40-rpts                                                                                      

Query      401 PYPMDIHESPVTCTAYFADCPPDLILVLYSIGVKHKKQGYSNKEWPVSGGAWNLGAQTYPEIIITGHADGTIKFWDASAM 480 
WD40-rpts                                    (____________________WD 7____________________)    

Query      481 TLQMLYKLKTSKVFEKQKAGEGKQTCELVEEDPFAVQMIYWCPESRIFCVSGVSAYVIIYKFSRHEVTTEIVSLEVRLQC 560 
WD40-rpts                      (____________________WD 8___________________)  (_______________W

Query      561 DVEDIITPEPETSPPFPDLSSQLPPSRSLSGSTNTVSSEGVTKDSIPCLSVKTRPVRMPPGYQADLVIQLVWVDGEPPQQ 640 
WD40-rpts      D 9______________)                                                              

Query      641 ITSLSISSAYGIVAFGNCTGLVVVDFIQKTVLLSMGTIDLYRSSDLYQRQPRSPRKNRQFIADNFCMRGLSNFYPDLTKR 720 
WD40-rpts                                                                                      

Query      721 IRTSYQSLTELNDSPVPLELERCKSPTSDHVNGHCTSPTSQSCSSGKRLSSADVSKVNRWGPGRPPFRKAQSAACMEISL 800 
WD40-rpts                                                                                      

Query      801 PVTTEETRENSYNRSRSSSISSIDKDSKEAITALYFMESFARKNDSTVSPCLFVGTSLGMVVLISLNLPSSDEQRFTEPV 880 
WD40-rpts                                                                                      

Query      881 VVLPSGTFLSLKGAVLTFSCMDRTGSLMQPPYEVWRDPNNTDENEKTWKRKLVMNYSSSSQEMGDHQYTIICSEKQAKVF 960 
WD40-rpts                                                                                      

Query      961 SLPSQTCLYVHNITETSFILQADVVVMCNSACLACFCANGHIMIMSLPSLRPMLDVNYLPLTDMRIARTFCFTNEGQALY 1040
WD40-rpts                                                                                      

Query     1041 LVSPTEIQRLTYSQEMCDNIQDMLGDLFTPIETPEAQNRGFLKGLFGGSGQTFDREELFGEASAGKASRSLAQHIPGPGS 1120
WD40-rpts                                                                                      

Query     1121 IEGMKGAAGGVMGELTRARIALDERGQRLGELEEKTAGMMTSAEAFSKHAHELMLKYKDKKWYQF 1185
WD40-rpts                                                                       

9 WD40-repeats found in QUERY=ENSMUSP00000110435 (Len=1185):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    17-56       2.82  231.23  0.04661       17.5%     -11.73
  WD 2:  Seg  2    63-97       5.81  354.54  0.00104       25.0%     44.19
  WD 3:  Seg  5   100-138      6.75  393.56  0.00031       25.0%     55.01
  WD 4:  Seg  9   144-182      5.91  358.73  0.00091       20.0%     55.37
  WD 5:  Seg 14   196-236      7.31  416.72  0.00015       32.5%     49.41
  WD 6:  Seg 18   239-277      6.82  396.45  0.00028       15.0%     56.81
  WD 7:  Seg 32   431-476      5.61  346.28  0.00134       25.0%     29.44
  WD 8:  Seg 36   497-541      4.25  290.21  0.00762        5.0%     46.16
  WD 9:  Seg 39   544-578      3.02  239.49  0.03627       10.0%      6.28

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   17-56     SP-----GSGSSSG------SNSGGAGSGSVHP-GGTAGLPREEIQESLTSD
   WD 2   63-97     T----------VRH------GFPYQPTALAFDP-VQKILAIGTRTGAIRILG
   WD 3  100-138    -G-----VDCYCQH------ESGAAVLQLQFLI-NEGALVSASSDDTLHLWN
   WD 4  144-182    -P-----AILHSLK------FNRERITYCHLPF-QSKWLYVGTERGNTHIVN
   WD 5  196-236    NK-----AIELSTK------THPGPVVHLSDSPRDEGKLLIGYENGTVVFWD
   WD 6  239-277    -S-----KRAELRV------YYDEAIHSIDWHH-EGKQFMCSHSDGSLTLWN
   WD 7  431-476    IG-----VKHKKQGYSNKEWPVSGGAWNLGAQT-YPEIIITGHADGTIKFWD
   WD 8  497-541    QKAGEGKQTCELVE------EDPFAVQMIYWCP-ESRIFCVSGVSAYVIIYK
   WD 9  544-578    RH-----EVTTEIV-----------SLEVRLQC-DVEDIITPEPETSPPFPD

   WD40 Template    TG-----ECLRTLS------GHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD