Input parameters:

  Query = ENSMUSP00000110429 (Len=1128)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000110429, Len=1128):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKFNFRKVLDGLTASSPGSGSSSGSNSGGAGSGSVHPGGTAGLPREEIQESLTSDYFQICKTVRHGFPYQPTALAFDPV 80  
WD40-rpts                                                                    (_______________WD

Query       81 QKILAIGTRTGAIRILGRPGVDCYCQHESGAAVLQLQFLINEGALVSASSDDTLHLWNLRQKRPAILHSLKFNRERITYC 160 
WD40-rpts       1______________)  (_________________WD 2________________)     (________________

Query      161 HLPFQSKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKSK 240 
WD40-rpts      _WD 3________________)             (__________________WD 4_________________)  (_

Query      241 RAELRVYYDEAIHSIDWHHEGKQFMCSHSDGSLTLWNLKSPSRPFQTTVPHGKSQREGRKSESCKPILKVEYKTCRNSEP 320 
WD40-rpts      ________________WD 5________________)                                           

Query      321 FIIFSGGLSYDKACRRPSLTIMHGKAITVLEMDHPIVEFLTLCETPYPNEFQEPYAVAVLLEKDLIVVDLTQTNFPIFEN 400 
WD40-rpts                                                                                      

Query      401 PYPMDIHESPVTCTAYFADCPPDLILVLYSIGVKHKKQGYSNKEWPVSGGAWNLGAQTYPEIIITGHADGTIKFWDASAM 480 
WD40-rpts                                         (__________________WD 6_________________)    

Query      481 TLQMLYKLKTSKVFEKQKAGEGKQTCELVEEDPFAVQMIYWCPESRIFCVSGVSAYVIIYKFSRHEVTTEIVSLEVRLQC 560 
WD40-rpts                      (____________________WD 7___________________)                   

Query      561 DVEDIITPEPETSPPFPDLSSQLPPSRSLSGSTNTVSSEGVTKDSIPCLSVKTRPVRMPPGYQADLVIQLVWVDGEPPQQ 640 
WD40-rpts                                                                                      

Query      641 ITSLSISSAYGIVAFGNCTGLVVVDFIQKTVLLSMGTIDLYRSSDLYQRQPRSPRKNRQFIADNFCMRGLSNFYPDLTKR 720 
WD40-rpts                                                                                      

Query      721 IRTSYQSLTELNDSPVPLELERCKSPTSETRENSYNRSRSSSISSIDKDSKEAITALYFMESFARKNDSTVSPCLFVGTS 800 
WD40-rpts                                                                                      

Query      801 LGMVVLISLNLPSSDEQRFTEPVVVLPSGTFLSLKGAVLTFSCMDRTGSLMQPPYEVWRDPNNTDENEKTWKRKLVMNYS 880 
WD40-rpts                                                                                      

Query      881 SSSQEMGDHQYTIICSEKQAKVFSLPSQTCLYVHNITETSFILQADVVVMCNSACLACFCANGHIMIMSLPSLRPMLDVN 960 
WD40-rpts                                                                                      

Query      961 YLPLTDMRIARTFCFTNEGQALYLVSPTEIQRLTYSQEMCDNIQDMLGDLFTPIETPEAQNRGFLKGLFGGSGQTFDREE 1040
WD40-rpts                                                                                      

Query     1041 LFGEASAGKASRSLAQHIPGPGSIEGMKGAAGGVMGELTRARIALDERGQRLGELEEKTAGMMTSAEAFSKHAHELMLKY 1120
WD40-rpts                                                                                      

Query     1121 KDKKWYQF 1128
WD40-rpts              

7 WD40-repeats found in QUERY=ENSMUSP00000110429 (Len=1128):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    63-97       5.71  350.47  0.00118       25.0%     44.87
  WD 2:  Seg  5   100-138      6.66  389.84  0.00035       25.0%     56.02
  WD 3:  Seg  9   144-182      5.78  353.59  0.00107       20.0%     55.88
  WD 4:  Seg 14   196-236      7.16  410.22  0.00018       32.5%     49.54
  WD 5:  Seg 18   239-277      6.76  394.02  0.00030       15.0%     56.49
  WD 6:  Seg 32   436-476      5.89  357.87  0.00094       22.5%     24.61
  WD 7:  Seg 36   497-541      4.08  283.05  0.00951        5.0%     45.32

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   63-97     T----------VRH-GFPYQPTALAFDP-VQKILAIGTRTGAIRILG
   WD 2  100-138    -G-----VDCYCQH-ESGAAVLQLQFLI-NEGALVSASSDDTLHLWN
   WD 3  144-182    -P-----AILHSLK-FNRERITYCHLPF-QSKWLYVGTERGNTHIVN
   WD 4  196-236    NK-----AIELSTK-THPGPVVHLSDSPRDEGKLLIGYENGTVVFWD
   WD 5  239-277    -S-----KRAELRV-YYDEAIHSIDWHH-EGKQFMCSHSDGSLTLWN
   WD 6  436-476    KK-----QGYSNKEWPVSGGAWNLGAQT-YPEIIITGHADGTIKFWD
   WD 7  497-541    QKAGEGKQTCELVE-EDPFAVQMIYWCP-ESRIFCVSGVSAYVIIYK

   WD40 Template    TG-----ECLRTLS-GHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD