Input parameters:

  Query = ENSMUSP00000110428 (Len=1104)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000110428, Len=1104):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKFNFRKVLDGLTASSPGSGSSSGSNSGGAGSGSVHPGGTAGLPREEIQESLTSDYFQICKTVRHGFPYQPTALAFDPV 80  
WD40-rpts                                                                    (_______________WD

Query       81 QKILAIGTRTGAIRILGRPGVDCYCQHESGAAVLQLQFLINEGALVSASSDDTLHLWNLRQKRPAILHSLKFNRERITYC 160 
WD40-rpts       1______________)  (_________________WD 2________________)     (________________

Query      161 HLPFQSKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKSK 240 
WD40-rpts      _WD 3________________)             (__________________WD 4_________________)  (_

Query      241 RAELRVYYDEAIHSIDWHHEGKQFMCSHSDGSLTLWNLKSPSRPFQTTVPHGKSQREGRKSESCKPILKVEYKTCRNSEP 320 
WD40-rpts      ________________WD 5________________)                                           

Query      321 FIIFSGGLSYDKACRRPSLTIMHGKAITVLEMDHPIVEFLTLCETPYPNEFQEPYAVAVLLEKDLIVVDLTQTNFPIFEN 400 
WD40-rpts                                                                                      

Query      401 PYPMDIHESPVTCTAYFADCPPDLILVLYSIGVKHKKQGYSNKEWPVSGGAWNLGAQTYPEIIITGHADGTIKFWDASAM 480 
WD40-rpts                                         (__________________WD 6_________________)    

Query      481 TLQMLYKLKTSKVFEKQKAGEGKQTCELVEEDPFAVQMIYWCPESRIFCVSGVSAYVIIYKFSRHEVTTEIVSLEVRLQC 560 
WD40-rpts                            (_________________WD 7________________)                   

Query      561 DVEDIITPEPETSPPFPDLSSQLPPSRSLSGSTNTVSSEGVTKDSIPCLSVKTRPVRMPPGYQADLVIQLVWVDGEPPQQ 640 
WD40-rpts                                                                                      

Query      641 ITSLSISSAYGIVAFGNCTGLVVVDFIQKTVLLSMGTIDLYRSSDLYQRQPRSPRKNRQFIAGLTELNDSPVPLELERCK 720 
WD40-rpts                                                                                      

Query      721 SPTSETRENSYNRSRSSSISSIDKDSKEAITALYFMESFARKNDSTVSPCLFVGTSLGMVVLISLNLPSSDEQRFTEPVV 800 
WD40-rpts                                                                                      

Query      801 VLPSGTFLSLKGAVLTFSCMDRTGSLMQPPYEVWRDPNNTDENEKTWKRKLVMNYSSSSQEMGDHQYTIICSEKQAKVFS 880 
WD40-rpts                                                                                      

Query      881 LPSQTCLYVHNITETSFILQADVVVMCNSACLACFCANGHIMIMSLPSLRPMLDVNYLPLTDMRIARTFCFTNEGQALYL 960 
WD40-rpts                                                                                      

Query      961 VSPTEIQRLTYSQEMCDNIQDMLGDLFTPIETPEAQNRGFLKGLFGGSGQTFDREELFGEASAGKASRSLAQHIPGPGSI 1040
WD40-rpts                                                                                      

Query     1041 EGMKGAAGGVMGELTRARIALDERGQRLGELEEKTAGMMTSAEAFSKHAHELMLKYKDKKWYQF 1104
WD40-rpts                                                                      

7 WD40-repeats found in QUERY=ENSMUSP00000110428 (Len=1104):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    63-97       5.67  348.84  0.00124       25.0%     44.11
  WD 2:  Seg  5   100-138      6.44  380.72  0.00046       25.0%     56.03
  WD 3:  Seg  9   144-182      5.73  351.45  0.00114       20.0%     56.00
  WD 4:  Seg 14   196-236      7.07  406.75  0.00021       32.5%     49.73
  WD 5:  Seg 18   239-277      6.71  391.80  0.00033       15.0%     56.39
  WD 6:  Seg 31   436-476      5.70  350.14  0.00119       22.5%     22.04
  WD 7:  Seg 35   503-541      4.04  281.65  0.00993        5.0%     46.74

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   63-97     T-----VRH-GFPYQPTALAFDP-VQKILAIGTRTGAIRILG
   WD 2  100-138    -GVDCYCQH-ESGAAVLQLQFLI-NEGALVSASSDDTLHLWN
   WD 3  144-182    -PAILHSLK-FNRERITYCHLPF-QSKWLYVGTERGNTHIVN
   WD 4  196-236    NKAIELSTK-THPGPVVHLSDSPRDEGKLLIGYENGTVVFWD
   WD 5  239-277    -SKRAELRV-YYDEAIHSIDWHH-EGKQFMCSHSDGSLTLWN
   WD 6  436-476    KKQGYSNKEWPVSGGAWNLGAQT-YPEIIITGHADGTIKFWD
   WD 7  503-541    -KQTCELVE-EDPFAVQMIYWCP-ESRIFCVSGVSAYVIIYK

   WD40 Template    TGECLRTLS-GHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD