Input parameters:

  Query = ENSMUSP00000110423 (Len=466)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000110423, Len=466):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKFNFRKVLDGLTASSPGSGSSSGSNSGGAGSGSVHPGGTAGLPREEIQESLTSDYFQICKTVRHGFPYQPTALAFDPV 80  
WD40-rpts                                                                    (_______________WD

Query       81 QKILAIGTRTGAIRILGRPGVDCYCQHESGAAVLQLQFLINEGALVSASSDDTLHLWNLRQKRPAILHSLKFNRERITYC 160 
WD40-rpts       1______________)  (_________________WD 2________________)     (________________

Query      161 HLPFQSKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKSK 240 
WD40-rpts      _WD 3________________)             (__________________WD 4_________________)  (_

Query      241 RAELRVYYDEAIHSIDWHHEGKQFMCSHSDGSLTLWNLKSPSRPFQTTVPHGKSQREGRKSESCKPILKVEYKTCRNSEP 320 
WD40-rpts      ________________WD 5________________)    (_________________WD 6________________)

Query      321 FIIFSGGLSYDKACRRPSLTIMHGKAITVLEMDHPIVEFLTLCETPYPNEFQEPYAVAVLLEKDLIVVDLTQTNFPIFEN 400 
WD40-rpts                                                                                      

Query      401 PYPMDIHESPVTCTAYFADCPPDLILVLYSIGVKHKKQGYSNKEWPVSGGAWNLGAQTYPEIIITG 466 
WD40-rpts                                                                        

6 WD40-repeats found in QUERY=ENSMUSP00000110423 (Len=466):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    63-97       7.27  415.03  0.00016       25.0%     44.03
  WD 2:  Seg  5   100-138      8.10  449.14  5.5e-05       25.0%     56.55
  WD 3:  Seg  9   144-182      7.31  416.82  0.00015       20.0%     54.91
  WD 4:  Seg 14   196-236      8.55  468.04  3.1e-05       32.5%     49.56
  WD 5:  Seg 18   239-277      7.96  443.64  6.5e-05       15.0%     56.65
  WD 6:  Seg 22   282-320      3.54  261.09  0.01871       10.0%      6.17

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   63-97     T-----VRHGFPYQPTALAFDP-VQKILAIGTRTGAIRILG
   WD 2  100-138    -GVDCYCQHESGAAVLQLQFLI-NEGALVSASSDDTLHLWN
   WD 3  144-182    -PAILHSLKFNRERITYCHLPF-QSKWLYVGTERGNTHIVN
   WD 4  196-236    NKAIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWD
   WD 5  239-277    -SKRAELRVYYDEAIHSIDWHH-EGKQFMCSHSDGSLTLWN
   WD 6  282-320    -SRPFQTTVPHGKSQREGRKSE-SCKPILKVEYKTCRNSEP

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD