Input parameters:

  Query = ENSMUSP00000110002 (Len=550)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000110002, Len=550):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 ALLHLTMVKLALHNIKNFFPIAGLEFSELPVTSPLGIAVIKNLENWEQILQEKMDHFEGPPPNYVNTYPTDLSVGAGPAI 80  
WD40-rpts                                                                                      

Query       81 LRNKAMLEPENTPFKSRDSSALPVKRLWHFLVKQEVLQETFIRYIFTKKRKQSESVEEHVEQVKHNSVAEDCHIKVEADL 160 
WD40-rpts                                                                                      

Query      161 GYPGGKAKVIHKESDMIMAFSINKANCNEIVLASTHDVQELDVTSLLACQSYIWIGEEYDRESKSSDDIDYRGSTTTLYQ 240 
WD40-rpts                                                                                      

Query      241 PGAASHSSSQPHPPPSLPWLGSGQTSTGATVLMKRNLHNVKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQAGN 320 
WD40-rpts                             (__________________WD 1__________________)    (__________

Query      321 ARVTRLYFNSQGNKCGVADGEGFLSIWQVNQTASNPKPYMSWQCHSKATSDFAFITSSSLVATSGHSNDNRNVCLWDTLI 400 
WD40-rpts      _______WD 2________________)       (__________________WD 3__________________)   

Query      401 SPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGYICIFDIRQRQLIHTFQAHDSAIKALALDSCEEYFTTGSAEGNI 480 
WD40-rpts         (_________________WD 4________________)   (_________________WD 5_____________

Query      481 KVWRLTGHGLIHSFKSEHAKQSIFRNIGAGVMQIAISQDNRLFSCGADGTLKTRVLPSAFNIPNRILDIL 550 
WD40-rpts      ___)   (_____________________WD 6_____________________)               

6 WD40-repeats found in QUERY=ENSMUSP00000110002 (Len=550):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   264-305      8.05  447.33  5.8e-05       15.0%     49.24
  WD 2:  Seg 13   310-348      8.03  446.30  6.0e-05       15.0%     55.18
  WD 3:  Seg 17   356-397      6.96  402.17  0.00024       10.0%     49.43
  WD 4:  Seg 21   404-442      9.09  490.27  1.5e-05       25.0%     51.06
  WD 5:  Seg 25   446-484      9.58  510.43  8.2e-06       25.0%     53.66
  WD 6:  Seg 29   488-535      5.38  336.93  0.00179       22.5%     51.62

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  264-305    QTSTGATVLMKRN----------LHNVKRMTSHPVHQYYLTGA---QDGSVRMFE
   WD 2  310-348    -QQLVCF--RQAG----------NARVTRLYFNSQGNKCGVAD---GEGFLSIWQ
   WD 3  356-397    -PKPYMS--WQCH----------SKATSDFAFITSSSLVATSGHSNDNRNVCLWD
   WD 4  404-442    -NSLIHG--FTCH----------DHGATVLQYAPKQQLLISGG---RKGYICIFD
   WD 5  446-484    -RQLIHT--FQAH----------DSAIKALALDSCEEYFTTGS---AEGNIKVWR
   WD 6  488-535    -HGLIHS--FKSEHAKQSIFRNIGAGVMQIAISQDNRLFSCGA----DGTLKTRV

   WD40 Template    TGECLRT--LSGH----------TSGVTSVSFSPDGKRLVSGS---EDGTIKVWD