Input parameters:

  Query = ENSMUSP00000109963 (Len=185)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000109963, Len=185):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 QAAVLVPAGTGAVQPAEPGPWIERVVGWLGKVFLQDNPTRPTSPEAGNTLRRWRCHVQRFFYRIYATLRIEELFSIIRDF 80  
WD40-rpts      (_______________________________________________________________________________

Query       81 PDSRPAIEDLKYCLERTDQRQQLLVSLKVALETRLLHPGVNTCDIITLYISAIKALRVLDPSMVILEVACEPIRRYLRTR 160 
WD40-rpts      _____WD 1_______________________________________________________________________

Query      161 EDTVRQIVAGLTGDSDGTGDLAVEL 185 
WD40-rpts      _____________)           

1 WD40-repeats found in QUERY=ENSMUSP00000109963 (Len=185):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-174      3.05  240.73  0.03492       20.0%     -2.28

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-174    QAAVLVPAGTGAVQPAEPGPWIERVVGWLGKVFLQDNPTRPTSPEAGNTLRRWRCHVQRFFYRIYATLRIEELFSIIRDFPDSRPAIEDLKYCLERTDQRQQLLVSLKVALETRLLHPGVNTCDIITLYISAIKALRVLDPSMVILEVACEPIRRYLRTREDTVRQIVAGLTGD

   WD40 Template    TGECLRTLSGHTSGVTSVSF----------------------S-------------------------------------PDG--------------K----------------RLVSGSE------------------DGTI----------------K-----------VWD