WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000109908 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000109908 (Len=2433) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000109908, Len=2433): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGFLHQLQLLLWKNVTLKRRSPWVLAFEIFIPLVLFFILLGLRQKKPTISVKEAFYTAAPLTSAGILPVMQSLCPDGQRD 80
WD40-rpts
Query 81 EFGFLQYANSTVTQLLERLHRVVEEGNLFDPVRPSLGSELEALRQRLEALSSGPGTWESHSARPAVSSFSLDSVARDQRE 160
WD40-rpts
Query 161 LWRFLMQNLSLPNSTAQALLAARVDPSEVYRLLFGPLPDLDGKLGFLRKQEPWSRLGSNPLLQMEELLLAPALLEQLTCA 240
WD40-rpts
Query 241 PGSGELGRILTMPEGHQVDLQGYRDAVCSGQATARAQRFSDLAAELRNQLDTAKIAQQLGFDVPNGSDPQPQAPSPQSLP 320
WD40-rpts
Query 321 ALLGDLLDAQKLLQDVDVLSALALLLPQGACAGQASAPQASSLNGLANSTGIGANSGSNTTVEEGTQSPVSPASPDTLQG 400
WD40-rpts
Query 401 QCSAFVQLWAGLQPILCGNNRTIEPEALRRGNMSSLGFTSKEQRNLGLLVHLMTSNPKILYAPVGSEADRVILKANETFA 480
WD40-rpts
Query 481 FVGNVTHYAQVWLNISTEIRSFLEQGRLQQHLQWLQQYVADLQLHPEAMNLSLEELPPALRQDFSLPNGTALLQQLDTID 560
WD40-rpts
Query 561 NAACGWIQFMSKVSVDIFKGFPDEESIVNYTLNQAYQDNVTVFASVIFQTRKDGSLPPHVHYKIRQNSSFTEKTNEIRRA 640
WD40-rpts
Query 641 YWRPGPNTGGRFYFLYGFVWIQDMMERAIINTFVGHDVVEPGNYVQMFPYPCYTRDDFLFVIEHMMPLCMVISWVYSVAM 720
WD40-rpts
Query 721 TIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLMHSHVLIIWLFLAVYAVATIMFCF 800
WD40-rpts
Query 801 LVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASLMSTTAFGLGSKYFALYEVAGVGIQWHTFS 880
WD40-rpts
Query 881 QSPVEGDDFNLLLAVTMLMVDTVVYGVLTWYIEAVHPGMYGLPRPWYFPLQKSYWLGSGRTEAWEWSWPWAHTPRLSVME 960
WD40-rpts
Query 961 EDQACAMESRHFEETRGMEEEPTHLPLVVCVDKLTKVYKNDKKMALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLF 1040
WD40-rpts
Query 1041 PPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRKETDKMIEDLELSNKRHSLVQ 1120
WD40-rpts
Query 1121 TLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKC 1200
WD40-rpts
Query 1201 CGSPLFLKGAYGDGYRLTLVKQPAEPGTSQEPGLASSPSGCPRLSSCSEPQVSQFIRKHVASSLLVSDTSTELSYILPSE 1280
WD40-rpts
Query 1281 AVKKGAFERLFQQLEHSLDALHLSSFGLMDTTLEEVFLKVSEEDQSLENSEADVKESRKDVLPGAEGLTAVGGQAGNLAR 1360
WD40-rpts
Query 1361 CSELAQSQASLQSASSVGSARGEEGTGYSDGYGDYRPLFDNLQDPDNVSLQEAEMEALAQVGQGSRKLEGWWLKMRQFHG 1440
WD40-rpts
Query 1441 LLVKRFHCARRNSKALCSQILLPAFFVCVAMTVALSVPEIGDLPPLVLSPSQYHNYTQPRGNFIPYANEERQEYRLRLSP 1520
WD40-rpts
Query 1521 DASPQQLVSTFRLPSGVGATCVLKSPANGSLGPMLNLSSGESRLLAARFFDSMCLESFTQGLPLSNFVPPPPSPAPSDSP 1600
WD40-rpts
Query 1601 VSPDEDSLQAWNMSLPPTAGPETWTSAPSLPRLVHEPVRCTCSAQGTGFSCPSSVGGHPPQMRVVTGDILTDITGHNVSE 1680
WD40-rpts
Query 1681 YLLFTSDRFRLHRYGAITFGNVQKSIPASFGARVPPMVRKIAVRRVAQVLYNNKGYHSMPTYLNSLNNAILRANLPKSKG 1760
WD40-rpts
Query 1761 NPAAYGITVTNHPMNKTSASLSLDYLLQGTDVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPVIYWLANY 1840
WD40-rpts
Query 1841 VWDMLNYLVPATCCVIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVINLFIGITATV 1920
WD40-rpts
Query 1921 ATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYYAKIGQFDKMKSPFEWDIVTRGLVAMTVEGF 2000
WD40-rpts
Query 2001 VGFFLTIMCQYNFLRQPQRLPVSTKPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPG 2080
WD40-rpts (_
Query 2081 ECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKDLLQVQQSLGYCPQFDALFDELTAREHLQLYTRLRGIPWK 2160
WD40-rpts ___________________________WD 1____________________________)
Query 2161 DEAQVVKWALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVL 2240
WD40-rpts
Query 2241 TSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQNVKDVVRFFNRNFPEAMLKERHHTKVQYQL 2320
WD40-rpts
Query 2321 KSEHISLAQVFSKMEQVVGVLGIEDYSVSQTTLDNVFVNFAKKQSDNVEQQEAEPSSLPSPLGLLSLLRPRPAPTELRAL 2400
WD40-rpts
Query 2401 VADEPEDLDTEDEGLISFEEERAQLSFNTDTLC 2433
WD40-rpts
 1 WD40-repeats found in QUERY=ENSMUSP00000109908 (Len=2433): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 23 2079-2140 2.81 230.68 0.04739 27.5% 17.67Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2079-2140 PGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKDLLQVQQSLGYCPQFDALFD WD40 Template TGECLRTLSGHTSGVTS-------VSFSPDGKRLVSGSEDGTI---------------KVWD |
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