Input parameters:

  Query = ENSMUSP00000109767 (Len=2493)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000109767, Len=2493):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEAQSYQEVMKNNGQHLFSSQHRSLTRQSRRRTATNNTLMERFLQDVLRHHPYNYQDNRSAPNEPEAAAAAAAAADPGSP 80  
WD40-rpts                                                                                      

Query       81 EVVVVLDDSDEKEDDTADSGAERNSEDSGSVEEIDYRPGTSQEHAEVAVRPSVIQKLERGQQQSLELAHKVESGVKKVNS 160 
WD40-rpts                                                                                      

Query      161 VGVVQATTSGKKLVRPPVICNAPASSLPSGSFERPVAANSVPRLVLAVASDSFPACDTENLETYFDSPDQGPSNPSSQPK 240 
WD40-rpts      (_________________WD 1_________________)                                        

Query      241 TKDPKKKLSINLDKLLAQRNLRAKGASFSPVVRVRELTGSELCSVRAESSELEAGTAGNPRETDTLPEQAREGAIPKRRE 320 
WD40-rpts                                                                                      

Query      321 ASRSNTVRPQEETRLVLNKPTLLKQKRSVSSEERFSCGSRQAVPGPSQAAVRDLSLLEEEVEEEKQEEEEEEEQEEEEEH 400 
WD40-rpts                                                                                      

Query      401 EEEEEGVDQEDASYESRGSDMSFDCGSSCQSLSALSELTAREINVSEETHAYSQPRNETPTVSGATSDNGSSSRQVITQN 480 
WD40-rpts                                                                                      

Query      481 IQLISLVDESYESSGSEVNFDGDDSLPSTSHRPPQPVEVVVPLRLVDKSYGSGSSEPCEDSGSSADETPAASRQQNPVRN 560 
WD40-rpts                                                                                      

Query      561 THANLVDENYGSSSFSSDSDAALDHPQVPVQEGSPRGRAVGQGNEEQPSSAEAHPERDGSLETVAHELQRESQEINLPNQ 640 
WD40-rpts                                                                                      

Query      641 KNTSLGDMNCESHGPEVGFHADAQLEADQSPVNPEEVDLDLENQSVHSGISNLSFDSNASYQSANDQPQGAWGEVNLDEL 720 
WD40-rpts                                                                                      

Query      721 NVDMEVKSNGCSSSELTFDSDSPLLSVTERSLLDFEGLNEDDFNLEDENCVSSSSDITFDSDIPDDSVADQPQVAVYEEE 800 
WD40-rpts                                                                                      

Query      801 PVGLENKSNESCVSGITFDSDIPLHSGNDHPEVAVKEVIIKEDENVHLEGKNDNPSGSEICLDSNVPLHSVTNSDVAVKK 880 
WD40-rpts                                                                                      

Query      881 INPPKEDQVQIEQIEQKENEPTDSELNLDCNSVNSKPGCSEDPIILRVSETRLDSHVPFQSVIRKCEVVVKNVCLQKEKH 960 
WD40-rpts                                                                                      

Query      961 AELTSKSTESHSEVSSASTASHPVTEPYVGKKAKRKTKHLEEVNSDDEYGGSQPTFKFDVFPRTMTEKPQPAALKEGHAD 1040
WD40-rpts                                                                                      

Query     1041 PKDKITELRGMAVNVNTADCLDSVLSQPQLASNENCVELKDTDGKPSDSKASADSTGHFHSLPKQEFDVVSKMNEWKKEA 1120
WD40-rpts                                                                                      

Query     1121 KVLEQKISDLIYSKIIHDSNVSFRSAMDQLELALKQISLGNNDQVSLEDNSQDTCSETNLDSGFSVQAVVEPPEPEVTVL 1200
WD40-rpts                                                                                      

Query     1201 EPEHVEQEGRNNVPCDSEVSVDANGSVQLEAGQHSESGENRSQKDTDDTEGKRDDAQGFGITCDSNVPQPLAGHIEVVQD 1280
WD40-rpts                                                                                      

Query     1281 IDHWKDHVDLEDKLGESKNSKVNFHSDEPLQAVTNATQEPVEEINLPRGRASPNGNGCEPYGSTIVPVTNVIFCSVIQKP 1360
WD40-rpts                                                                                      

Query     1361 QRLQKKCTSLKENSSNPCPEVNVDSCDGPEVSVDSNDPCQSVAGHLQKPDKEMNLKEDHIYLEDKSYKLVDFEPTYDSDD 1440
WD40-rpts                                                                                      

Query     1441 PVQFVTVPSVEAVSIKEVNLQKENPDDLENENFQPCCSEVACNSAVHLQSEADPPQVACKEADLDKKALDIEDKGSVTCV 1520
WD40-rpts                                                                                      

Query     1521 PEVVYDSDVSFQIVVNQVQTSDGETDSPQVVFVDVVSSDSDCDREVISDSNIPLQLEPPQMTVKETSDINTDSLGSAANE 1600
WD40-rpts                                                                                      

Query     1601 KYYCKFCGCDYEASQSVTNQSKESFKIINRKNDYIILGDSTCPSCGHELNFNVDPSDQPTTCQLQQPDRNFIDPEDKNFG 1680
WD40-rpts                                                                                      

Query     1681 SKCPKRKLNWEDTAHPVTHQLQKTGEATSLRKDQKNRFKRDRGWESSSFAGDHAAYAVSVIRQTALNSCGSELNFQDDTF 1760
WD40-rpts                                                                                      

Query     1761 YHSDIDPPQPKKKGQGKKVTFDLRVTKYEYPPNPMYGEGEEVAEDDLKEVVVHEASPQGQAPPSIVGKTCPQGREDDVKT 1840
WD40-rpts                                                                                      

Query     1841 NTQACQGYFYSYYDGGSETKKILLGEEEKTIRSDLNQNTTSIQHVKGKVGDTGDFSVDLGKQSCSLAEGLHQQHGQVTSQ 1920
WD40-rpts                                                                                      

Query     1921 NQVEVRCGIQASSGKKRKITEQEEDSPKRKCFHHDSQKKKKAQAGITELPEPQTKVLEPVQPDSLVYIFSSLSMKEDQSL 2000
WD40-rpts                                                                                      

Query     2001 NPPKTKPGSDSDLPHIYSCREHTSSGPRRKRTVINPPQNLMVPEVGIDLNRHDPKPNAGDDSAKRQNLVSTSFMAMPKKS 2080
WD40-rpts                                                                                      

Query     2081 VLKFQRTNQSSFLKKSEDVGATQVPKDNFQQTLVNRDGAKKFPKSVKKEDLESQNQRKFWKKKMVAANKLCLIKNAYKTM 2160
WD40-rpts                                                                                      

Query     2161 VLRKKSKLASEKLAIWIQLKATDIIRKYVSRCHGLMPRRHLSKTVLIRMQLRKKKIVARKIKEAKRAAEALALKLSRPSC 2240
WD40-rpts                                                                                      

Query     2241 PPRAPCPPRALCPPRAPCPPRALCPPRAPCPPRALCTPRAPCPPRALCTPRAPCPPRALCTPRAPCPPRALRAPCPPRAL 2320
WD40-rpts                                                                                      

Query     2321 CSPRAPCPPRALCPPRAPCPPRAPRAPCPPRAPCPPRAPCLPRAPCPPRAPCPPRAPCLPRAPCLPQAPCPPRALCLPRV 2400
WD40-rpts                                                                                      

Query     2401 SCPPLPLCAPCPPCAPVLPAGAEEQLSTTAGPAELPAHLSNAGGIKRYRKTYFRRRKRLLPVREYDLRSLSSTTNTDRMV 2480
WD40-rpts                                                                                      

Query     2481 TRLASKSKSNEAK 2493
WD40-rpts                   

1 WD40-repeats found in QUERY=ENSMUSP00000109767 (Len=2493):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   161-200      3.21  247.17  0.02868       22.5%     -5.22

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  161-200    VGVVQATTSGKKLVRPPVICNAPASSLPSGSFERPVAANS

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD