Input parameters:

  Query = ENSMUSP00000109728 (Len=500)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000109728, Len=500):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAKFVIAGKANCPYYAKAELLADYLQKNLPDFRIFKITQHPDKWEDWVEDVCERNMWDHRTSPIIWRELLDRGGRGLLLG 80  
WD40-rpts                                 (____________________________________________________

Query       81 GYNEFLEHAQLYYGVTSNMTTELMMVIAKENMQTHTEQQLDKETMKDLISPLQVWIASAGTYVCCHLIPLLLSGEVFGMH 160 
WD40-rpts      WD 1___________________________________________________)                        

Query      161 TEISLTLFDQEQREDCLRSIVMETQDLASPVLRTVSFCTTVKEAFLQAQVIIILDDSTEEEVYSLESCLRSRVPLCRLYG 240 
WD40-rpts                                                                                      

Query      241 YLIEKNAHKSVKVIVGGKNFVNLKTTLLMQYAPNIASNIIAVALGVEGQAKAVLARKMKTTSANIKDVIIWGNITGNNYV 320 
WD40-rpts                                                                                      

Query      321 DLRKAKVYNYESAVKGPPGHYHSVLSLIFDREWITKEFVQTLKILSSTGKQFGGILAAHSIATTLKYWYHGSPPGEIVSL 400 
WD40-rpts                                                                                      

Query      401 GVMSEGQFDIPEGIVFSMPVKFENGTWVVLTDLEDISLSEKTLSRLTGDLIQEKLVACGDLLTFQPIEEDPKDNEPSNTG 480 
WD40-rpts                                                                                      

Query      481 MNEEKEQPGSDDSDEKNEDQ 500 
WD40-rpts                          

1 WD40-repeats found in QUERY=ENSMUSP00000109728 (Len=500):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    28-136      2.91  234.97  0.04161       22.5%     20.09

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   28-136    NLPDFRIFKITQHPDKWEDWVEDVCERNMWDHRTSPIIWRELLDRGGRGLLLGGYNEFLEHAQLYYGVTSNMTTELMMVIAKENMQTHTEQQLDKETMKDLISPLQVWI

   WD40 Template    TGECLRTLSGHTSG--------------VTSVSFSPD---------GKRLVSGS---------------EDGT-------------------------------IKVWD