Input parameters:

  Query = ENSMUSP00000109618 (Len=475)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000109618, Len=475):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSWRPQYRSSKFRNVYGKAANREHCFDGIPITKNVHDNHFCAVNARFLAIVTESAGGGSFLVIPLEQTGRIEPNYPKVCG 80  
WD40-rpts                                                                             (________

Query       81 HQGNVLDIKWNPFIDNIIASCSEDTSVRIWEIPDGGLKRNMTEALLELHGHSRRVGLVEWHPTTNNILFSAGYDYKVLIW 160 
WD40-rpts      _________WD 1_________________)          (_________________WD 2_________________

Query      161 NLDIGEPVKMIDCHTDVILCMSFNTDGSLLTTTCKDKKLRVIEPRSGRVLQEANCKNHRVNRVVFLGNMKRLLTTGVSRW 240 
WD40-rpts      )   (_________________WD 3________________)   (___________________WD 4__________

Query      241 NTRQIALWDQEDLSMPMIEEEIDGLSGLLFPFYDADTHMLYLAGKGDGNIRYYEISTEKPYLSYLMEFRSPAPQKGLGVM 320 
WD40-rpts      ________)      (_________________WD 5________________)(___________________WD 6__

Query      321 PKHGLDVSACEVFRFYKLVTLKGLIEPISMIVPRRSDSYQEDIYPMTPGTEPALTPDEWLGGINRDPVLMSLKEGYKKSS 400 
WD40-rpts      ________________)                                                               

Query      401 KVVFKAPIREKKSVVVNGIDLLENVPPRTENELLRMFFRQQDEIRRLKEELAQKDIRLRQLQLELKNLRNNPKNC 475 
WD40-rpts                                                                                 

6 WD40-repeats found in QUERY=ENSMUSP00000109618 (Len=475):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    72-111      6.96  402.18  0.00024       22.5%     46.33
  WD 2:  Seg  9   122-161      6.68  390.54  0.00034       30.0%     52.96
  WD 3:  Seg 13   165-203      8.78  477.18  2.3e-05       27.5%     55.16
  WD 4:  Seg 17   207-249      5.55  343.86  0.00144       30.0%     44.56
  WD 5:  Seg 21   256-294      5.47  340.49  0.00160       12.5%     52.52
  WD 6:  Seg 25   295-337      3.77  270.31  0.01409       12.5%     36.86

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   72-111    -E---PNYPKVCGHQGNVLDIKWNPFI-DNIIA----SCSEDTSVRIWE
   WD 2  122-161    -T---EALLELHGHSRRVGLVEWHP-TTNNILF----SAGYDYKVLIWN
   WD 3  165-203    -G---EPVKMIDCHTDVILCMSFNT-D-GSLLT----TTCKDKKLRVIE
   WD 4  207-249    -G---RVLQEANCKNHRVNRVVFLG-N-MKRLLTTGVSRWNTRQIALWD
   WD 5  256-294    -P---MIEEEIDGLSGLLFPFYDAD-T-HMLYL----AGKGDGNIRYYE
   WD 6  295-337    ISTEKPYLSYLMEFRSPAPQKGLGV-M-PKHGL----DVSACEVFRFYK

   WD40 Template    TG---ECLRTLSGHTSGVTSVSFSP-D-GKRLV----SGSEDGTIKVWD