Input parameters:

  Query = ENSMUSP00000109586 (Len=350)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000109586, Len=350):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATEEKKPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 80  
WD40-rpts      (_______________WD 1______________)_________________WD 2________________)   (___

Query       81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160 
WD40-rpts      ______________WD 3________________)   (_________________WD 4________________)   

Query      161 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIVFVTSHEKRSPLRTPCDDDNPPVSFVKFSP 240 
WD40-rpts      (_________________WD 5________________)                    (_________________WD 

Query      241 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 320 
WD40-rpts      6________________)   (__________________WD 7__________________)   (_____________

Query      321 ISTACHPTENIIASAALENDKTIKLWKSDC 350 
WD40-rpts      _____WD 8_________________)   

8 WD40-repeats found in QUERY=ENSMUSP00000109586 (Len=350):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-35       5.54  343.55  0.00146        7.5%      6.26
  WD 2:  Seg  2    35-73       9.32  499.52  1.2e-05       47.5%     50.17
  WD 3:  Seg  6    77-115     10.86  563.46  1.6e-06       45.0%     58.16
  WD 4:  Seg 10   119-157     10.88  564.15  1.5e-06       42.5%     56.54
  WD 5:  Seg 14   161-199     10.94  566.64  1.4e-06       45.0%     57.00
  WD 6:  Seg 19   220-258      9.17  493.59  1.4e-05       30.0%     37.80
  WD 7:  Seg 22   262-303      8.90  482.26  2.0e-05       37.5%     57.49
  WD 8:  Seg 26   307-347      8.49  465.44  3.3e-05       35.0%     53.29

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-35     ----MATEEKKPETEAARAQ---PTPSSSATQS--KPTPVKPNY
   WD 2   35-73     YALKFTLAGHTKAVSSVKFS---PNGEWLASSS--ADKLIKIWG
   WD 3   77-115    GKFEKTISGHKLGISDVAWS---SDSNLLVSAS--DDKTLKIWD
   WD 4  119-157    GKCLKTLKGHSNYVFCCNFN---PQSNLIVSGS--FDESVRIWD
   WD 5  161-199    GKCLKTLPAHSDPVSAVHFN---RDGSLIVSSS--YDGLCRIWD
   WD 6  220-258    SPLRTPCDDDNPPVSFVKFS---PNGKYILAAT--LDNTLKLWD
   WD 7  262-303    GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS--EDNLVYIWN
   WD 8  307-347    KEIVQKLQGHTDVVISTACH---PTENIIASAALENDKTIKLWK

   WD40 Template    GECLRTLSGHTSGVTSVSFS---PDGKRLVSGS--EDGTIKVWD